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scrappie
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public |
Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group
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2025-03-25 |
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argp-standalone
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public |
Standalone version of arguments parsing functions from GLIBC.
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2025-03-25 |
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miniasm
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public |
Ultrafast de novo assembly for long noisy reads (though having no consensus step)
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2025-03-25 |
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fast5-research
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public |
ONT Research fast5 read/write package
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2025-03-25 |
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aiozmq
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public |
ZeroMQ integration with asyncio.
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2025-03-25 |
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jvarkit-msa2vcf
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public |
Getting a VCF file from a CLUSTAW or a FASTA alignment.
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2025-03-25 |
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phylosnp
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public |
PhyloSNP: An automated generator of phylogenetic trees from SNP data.
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2025-03-25 |
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tensorflow-tensorboard
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public |
TensorBoard lets you watch Tensors Flow
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2025-03-25 |
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idba
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public |
IDBA is a practical iterative De Bruijn Graph De Novo Assembler for sequence assembly in bioinformatics.
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2025-03-25 |
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ksnp
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public |
kSNP identifies the pan-genome SNPs in a set of genome sequences, and estimates phylogenetic trees based upon those SNPs.
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2025-03-25 |
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mbuffer
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public |
mbuffer is a tool for buffering data streams with a large set of unique features
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2025-03-25 |
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cabal-install
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public |
The cabal-install package provides the cabal command-line tool which simplifies the process of managing Haskell software by automating the fetching, configuration, compilation and installation of Haskell libraries and programs.
|
2025-03-25 |
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quasr
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public |
QUASR is lightweight pipeline for processing and analysis of high-throughput sequencing data.
|
2025-03-25 |
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stack
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public |
Stack is a cross-platform program for developing Haskell projects.
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2025-03-25 |
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magic
|
public |
MAGIC: A diffusion-based imputation method reveals gene-gene interactions in single-cell RNA-sequencing data
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2025-03-25 |
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readline
|
public |
library for editing command lines as they are typed in
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2025-03-25 |
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dm-sonnet
|
public |
Sonnet is a library built on top of TensorFlow for building complex neural networks.
|
2025-03-25 |
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lftp
|
public |
LFTP is a sophisticated file transfer program supporting a number of network protocols (ftp, http, sftp, fish, torrent).
|
2025-03-25 |
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age
|
public |
a tools that implements an algorithm for optimal alignment of sequences with structural variants (SVs)
|
2025-03-25 |
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jvarkit-sam2tsv
|
public |
Prints the SAM alignments as a TAB delimited file.
|
2025-03-25 |
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plinkseq
|
public |
PLINK/SEQ is an open-source C/C++ library for working with human genetic variation data.
|
2025-03-25 |
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beta
|
public |
Binding and Expression Target Analysis (BETA) is a software package that integrates ChIP-seq of transcription factors or chromatin regulators with differential gene expression data to infer direct target genes.
|
2025-03-25 |
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r-regresshaplo
|
public |
This package reconstructs haplotypes from a BAM file using a penalized regression approach.
|
2025-03-25 |
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globus-cli
|
public |
Globus CLI
|
2025-03-25 |
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globus-sdk
|
public |
Globus SDK for Python
|
2025-03-25 |
