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phono3py
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public |
A simulation package of phonon-phonon interaction related properties
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2023-06-16 |
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circleator
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public |
Flexible circular visualization of genome-associated data with BioPerl and SVG.
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2023-06-16 |
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apache-batik
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public |
Batik is a Java-based toolkit for applications or applets that want to use images in the Scalable Vector Graphics (SVG) format for various purposes, such as display, generation or manipulation.
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2023-06-16 |
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gramdist
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public |
GramDist is a utility for generating dissimilarity matrices using the relative complexity measure, a computationally efficient and alignment free evolutionary distance metric.
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2023-06-16 |
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gramcluster
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public |
GramCluster is a fast and accurate progressive clustering algorithm that relies on a grammar-based sequence distance and is particularly useful in clustering large datasets.
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2023-06-16 |
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gramalign
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public |
GramAlign is a time-efficient progressive Multiple Sequence Alignment (MSA) algorithm.
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2023-06-16 |
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gradle
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public |
Gradle is an open-source build automation tool focused on flexibility and performance.
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2023-06-16 |
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gensim
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public |
Topic Modelling for Humans
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2023-06-16 |
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r-rhierbaps
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public |
rhierbaps is R implementation of hierBAPS.
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2023-06-16 |
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ncarg-rangs
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public |
RANGS is the abbreviation of 'Regionally Accessible Nested Global Shorelines'.
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2023-06-16 |
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bash-kernel
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public |
A bash kernel for Jupyter
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2023-06-16 |
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persim
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public |
Distances and representations of persistence diagrams
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2023-06-16 |
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sumo
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public |
Heavy weight plotting tools for ab initio solid-state calculations.
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2023-06-16 |
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matlab-kernel
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public |
Jupyter Kernel for Matlab
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2023-06-16 |
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python-ripser
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public |
A Lean Persistent Homology Library for Python
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2023-06-16 |
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cellranger
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public |
Cell Ranger is a set of analysis pipelines that process Chromium single-cell RNA-seq output to align reads, generate feature-barcode matrices and perform clustering and gene expression analysis.
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2023-06-16 |
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bcl2fastq2
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public |
The Illumina bcl2fastq2 Conversion Software v2.20 demultiplexes sequencing data and converts base call (BCL) files into FASTQ files.
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2023-06-16 |
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libxslt
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public |
The XSLT C library developed for the GNOME project.
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2023-06-16 |
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libxml2
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public |
The XML C parser and toolkit of Gnome.
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2023-06-16 |
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fbpca
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public |
Fast computations of PCA/SVD/eigendecompositions via randomized methods.
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2023-06-16 |
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defiant
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public |
Differential methylation, Easy, Fast, Identification and ANnoTation.
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2023-06-16 |
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matplotlib
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public |
Publication quality figures in Python
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2023-06-16 |
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tsne
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public |
TSNE implementations for Python.
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2023-06-16 |
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martian
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public |
Martian is a language and framework for developing and executing complex computational pipelines.
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2023-06-16 |
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gpm
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public |
GPM ("General Purpose Mouse") software provides support for mouse devices in Linux virtual consoles.
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2023-06-16 |
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midnight-commander
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public |
GNU Midnight Commander is a visual file manager, licensed under GNU General Public License and therefore qualifies as Free Software. It's a feature rich full-screen text mode application that allows you to copy, move and delete files and whole directory trees, search for files and run commands in the subshell. Internal viewer and editor are included.
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2023-06-16 |
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tcllib
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public |
This package is intended to be a collection of Tcl packages that provide utility functions useful to large collection of Tcl programmers.
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2023-06-16 |
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globusconnectpersonal
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public |
Globus Connect Personal
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2023-06-16 |
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maxquant
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public |
MaxQuant is a quantitative proteomics software package designed for analyzing large mass-spectrometric data sets. License restricted.
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2023-06-16 |
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stockfish
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public |
Stockfish is a free, powerful UCI chess engine derived from Glaurung 2.1.
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2023-06-16 |
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justorthologs
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public |
JustOrthologs: a fast, accurate and user-friendly ortholog identification algorithm.
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2023-06-16 |
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morgan
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public |
MORGAN is part of our software for Markov chain Monte Carlo in Genetic Analysis.
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2023-06-16 |
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jvarkit-vcf2bam
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public |
Converts VCF to BAM files
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2023-06-16 |
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mro-data.table
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public |
Fast aggregation of large data (e.g. 100GB in RAM), fast ordered joins, fast add/modify/delete of columns by group using no copies at all, list columns, friendly and fast character-separated-value read/write. Offers a natural and flexible syntax, for faster development.
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2023-06-16 |
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abacas
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public |
ABACAS is intended to rapidly contiguate (align, order, orientate), visualize and design primers to close gaps on shotgun assembled contigs based on a reference sequence.
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2023-06-16 |
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gym
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public |
The OpenAI Gym: A toolkit for developing and comparing your reinforcement learning agents.
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2023-06-16 |
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pybullet
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public |
Official Python Interface for the Bullet Physics SDK specialized for Robotics Simulation and Reinforcement Learning
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2023-06-16 |
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phylophlan
|
public |
PhyloPhlAn is a computational pipeline for reconstructing highly accurate and resolved phylogenetic trees based on whole-genome sequence information.
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2023-06-16 |
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gdc-client
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public |
GDC Data Transfer Tool
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2023-06-16 |
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melonnpan
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public |
MelonnPan is a computational method for predicting metabolite compositions from shotgun metagenomic sequencing data.
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2023-06-16 |
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r-phylogic
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public |
Phylogenetic analysis of subclones across multiple cancer-tissue samples.
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2023-06-16 |
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azcopy
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public |
AzCopy is a command-line utility designed for copying data to/from Microsoft Azure Blob and File storage, using simple commands designed for optimal performance.
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2023-06-16 |
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titancna
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public |
Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer.
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2023-06-16 |
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sports1.0
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public |
Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs.
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2023-06-16 |
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sandstone-spawner
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public |
JupyterHub Spawner class for starting Sandstone HPC user instances.
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2023-06-16 |
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batchspawner
|
public |
This is modified batchspawner for Jupyterhub on HCC resources.
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2023-06-16 |
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sandstone-jupyterhub-login
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public |
This is modified JupyterHub multi-user spawner for Sandstone IDE on HCC resources.
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2023-06-16 |
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jupyter-duoauthenticator
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public |
Simple Duo Authenticator Plugin for JupyterHub.
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2023-06-16 |
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sandstone-slurm-assist
|
public |
This is modified Slurm scheduler assist app for Sandstone IDE on HCC resources.
|
2023-06-16 |
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duo_python
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public |
Duo two-factor authentication for Python web applications.
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2023-06-16 |
