| Package Name | Access | Summary | Updated |
|---|---|---|---|
| scrappie | public | Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group | 2025-03-25 |
| argp-standalone | public | Standalone version of arguments parsing functions from GLIBC. | 2025-03-25 |
| miniasm | public | Ultrafast de novo assembly for long noisy reads (though having no consensus step) | 2025-03-25 |
| fast5-research | public | ONT Research fast5 read/write package | 2025-03-25 |
| aiozmq | public | ZeroMQ integration with asyncio. | 2025-03-25 |
| jvarkit-msa2vcf | public | Getting a VCF file from a CLUSTAW or a FASTA alignment. | 2025-03-25 |
| phylosnp | public | PhyloSNP: An automated generator of phylogenetic trees from SNP data. | 2025-03-25 |
| tensorflow-tensorboard | public | TensorBoard lets you watch Tensors Flow | 2025-03-25 |
| idba | public | IDBA is a practical iterative De Bruijn Graph De Novo Assembler for sequence assembly in bioinformatics. | 2025-03-25 |
| ksnp | public | kSNP identifies the pan-genome SNPs in a set of genome sequences, and estimates phylogenetic trees based upon those SNPs. | 2025-03-25 |
| mbuffer | public | mbuffer is a tool for buffering data streams with a large set of unique features | 2025-03-25 |
| cabal-install | public | The cabal-install package provides the cabal command-line tool which simplifies the process of managing Haskell software by automating the fetching, configuration, compilation and installation of Haskell libraries and programs. | 2025-03-25 |
| quasr | public | QUASR is lightweight pipeline for processing and analysis of high-throughput sequencing data. | 2025-03-25 |
| stack | public | Stack is a cross-platform program for developing Haskell projects. | 2025-03-25 |
| magic | public | MAGIC: A diffusion-based imputation method reveals gene-gene interactions in single-cell RNA-sequencing data | 2025-03-25 |
| dm-sonnet | public | Sonnet is a library built on top of TensorFlow for building complex neural networks. | 2025-03-25 |
| lftp | public | LFTP is a sophisticated file transfer program supporting a number of network protocols (ftp, http, sftp, fish, torrent). | 2025-03-25 |
| age | public | a tools that implements an algorithm for optimal alignment of sequences with structural variants (SVs) | 2025-03-25 |
| jvarkit-sam2tsv | public | Prints the SAM alignments as a TAB delimited file. | 2025-03-25 |
| plinkseq | public | PLINK/SEQ is an open-source C/C++ library for working with human genetic variation data. | 2025-03-25 |
| beta | public | Binding and Expression Target Analysis (BETA) is a software package that integrates ChIP-seq of transcription factors or chromatin regulators with differential gene expression data to infer direct target genes. | 2025-03-25 |
| r-regresshaplo | public | This package reconstructs haplotypes from a BAM file using a penalized regression approach. | 2025-03-25 |
| globus-cli | public | Globus CLI | 2025-03-25 |
| globus-sdk | public | Globus SDK for Python | 2025-03-25 |
| abayesqr | public | aBayesQR is a viral quasispecies reconstruction algorithm that employs a maximum-likelihood framework to infer individual sequences in a mixture from high-throughput sequencing data. | 2025-03-25 |
