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vftools
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public |
VFTools is a a loose collection of additional tools and scripts which can be useful when using VirtualFlow.
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2023-06-16 |
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vgas
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public |
VGAS (viral genome annotation system) is a system combing ab initio method and similarity-based method, which can perform the functions of virus gene finding and function annotating merely depending on the gene sequence itself.
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2023-06-16 |
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vigor4
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public |
VIGOR4 (Viral Genome ORF Reader) is a Java application to predict protein sequences encoded in viral genomes.
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2023-06-16 |
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cutruntools
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public |
This package contains the pipeline for conducting a CUT&RUN analysis. The pipeline comprises of read trimming, alignment steps, motif finding steps, and finally the motif footprinting step.
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2023-06-16 |
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octave
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public |
GNU Octave is a high-level language, primarily intended for numerical computations
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2023-06-16 |
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r-centipede
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public |
CENTIPEDE learns a DNaseI footprint of a transcription factor and predicts its binding sites.
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2023-06-16 |
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atactk-cutruntools
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public |
A patched version of the atactk package for use with cutruntools.
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2023-06-16 |
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suitesparse
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public |
A suite of sparse matrix algorithms
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2023-06-16 |
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metis
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public |
METIS - Serial Graph Partitioning and Fill-reducing Matrix Ordering
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2023-06-16 |
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inla
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public |
Full Bayesian Analysis of Latent Gaussian Models using Integrated Nested Laplace Approximations
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2023-06-16 |
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r-mathlib
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public |
GNU R standalone mathematics library.
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2023-06-16 |
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gmrflib
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public |
Full Bayesian Analysis of Latent Gaussian Models using Integrated Nested Laplace Approximations
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2023-06-16 |
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taucs
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public |
A library of sparse linear solvers.
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2023-06-16 |
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torchvision
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public |
image and video datasets and models for torch deep learning
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2023-06-16 |
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pillow
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public |
Python Imaging Library (Fork)
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2023-06-16 |
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pillow-simd
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public |
Python Imaging Library (Fork)
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2023-06-16 |
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pymlst
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public |
python Mlst Local Search Tool
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2023-06-16 |
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libimagequant
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public |
Palette quantization library that powers pngquant and other PNG optimizers.
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2023-06-16 |
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r-inla
|
public |
Full Bayesian Analysis of Latent Gaussian Models using Integrated Nested Laplace Approximations
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2023-06-16 |
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r-hkprocess
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public |
Methods to make inference about the Hurst-Kolmogorov and the AR(1) process.
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2023-06-16 |
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pytorch
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public |
Tensors and Dynamic neural networks in Python with strong GPU acceleration
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2023-06-16 |
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xorriso
|
public |
ISO 9660 Rock Ridge Filesystem Manipulator
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2023-06-16 |
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retroseq
|
public |
RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference transposable elements.
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2023-06-16 |
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adfr-suite
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public |
AutoDockFR (or ADFR in short) is a protein-ligand docking program developed in the Sanner laboratory at Scripps Research under the AutoDock umbrella
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2023-06-16 |
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macs-simulator
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public |
MaCS is a simulator of the coalescent process that simulates geneologies spatially across chromosomes as a Markovian process.
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2023-06-16 |
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macs
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public |
Model Based Analysis for ChIP-Seq data.
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2023-06-16 |
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genodiver
|
public |
Geno-Diver is a complex animal genetic simulation tool that is able to simulate quantitative and/or fitness characters.
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2023-06-16 |
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povray
|
public |
The Persistence of Vision Raytracer.
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2023-06-16 |
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effector-p
|
public |
EffectorP is a machine learning method for fungal effector prediction in secretomes.
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2023-06-16 |
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weka
|
public |
The workbench for machine learning.
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2023-06-16 |
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delly-omp
|
public |
Structural variant discovery by integrated paired-end and split-read analysis.
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2023-06-16 |
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cenote-taker2
|
public |
Cenote-Taker2 is a pipeline for divergent virus discovery and annotation.
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2023-06-16 |
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phanotate
|
public |
PHANOTATE is a tool to annotate phage genomes.
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2023-06-16 |
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fastpath
|
public |
Fastpath is a fast and lightweight tool for finding the shortest path in a weighted graph.
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2023-06-16 |
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igs-portal-client
|
public |
Python-based client for downloading data made available through portals powered by the GDC-based portal system.
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2023-06-16 |
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scipio
|
public |
Scipio locates the regions coding for a query protein sequence in a DNA target sequence.
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2023-06-16 |
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basespace-cli
|
public |
Toolkit to perform regulatory genomics data analysis
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2023-06-16 |
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staphb-toolkit
|
public |
The StaPH-B ToolKit is a Python library of commonly used bioinformatics tools that help to inform public health action. The StaPH-B ToolKit utilizes the StaPH-B Docker Images to enable easy access of open-source software without the need of local installation and/or dependency maintenance.
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2023-06-16 |
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oma
|
public |
OMA standalone is a standalone package that can infer orthologs using the OMA algorithm on custom genomes.
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2023-06-16 |
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gethogs
|
public |
GETHOGs is a library to infer hierarchical orthologous groups from pairwise evolutionary relationship and its related reference species tree.
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2023-06-16 |
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libgdiplus
|
public |
Libgdiplus is the Mono library that provides a GDI+-compatible API on non-Windows operating systems. Our implementation uses Cairo to do most of the heavy lifting.
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2023-06-16 |
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mumax3
|
public |
GPU-accelerated micromagnetic simulator
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2023-06-16 |
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feh
|
public |
feh is an X11 image viewer aimed mostly at console users.
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2023-06-16 |
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imlib2
|
public |
Imlib 2 is the successor to Imlib. It is NOT a newer version - it is a completely new library.
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2023-06-16 |
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sss-test
|
public |
Selection on the Secondary Structure-test: a test that detects positive and negative selection from a set of orthologs, either small or long ncRNAs.
|
2023-06-16 |
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perl-sort-key
|
public |
The fastest way to sort anything in Perl
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2023-06-16 |
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perl-sort-mergesort
|
public |
Merge sorted streams to create a new stream
|
2023-06-16 |
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perl-fast
|
public |
FAST Analysis of Sequences Toolbox
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2023-06-16 |
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locarna
|
public |
LocARNA is a collection of alignment tools for the structural analysis of RNA.
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2023-06-16 |
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nofold
|
public |
NoFold is an approach for characterizing and clustering RNA secondary structures without computational folding or alignment.
|
2023-06-16 |
