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morgan
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public |
MORGAN is part of our software for Markov chain Monte Carlo in Genetic Analysis.
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2025-03-25 |
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jvarkit-vcf2bam
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public |
Converts VCF to BAM files
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2025-03-25 |
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mro-data.table
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public |
Fast aggregation of large data (e.g. 100GB in RAM), fast ordered joins, fast add/modify/delete of columns by group using no copies at all, list columns, friendly and fast character-separated-value read/write. Offers a natural and flexible syntax, for faster development.
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2025-03-25 |
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abacas
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public |
ABACAS is intended to rapidly contiguate (align, order, orientate), visualize and design primers to close gaps on shotgun assembled contigs based on a reference sequence.
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2025-03-25 |
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pybullet
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public |
Official Python Interface for the Bullet Physics SDK specialized for Robotics Simulation and Reinforcement Learning
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2025-03-25 |
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gym
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public |
The OpenAI Gym: A toolkit for developing and comparing your reinforcement learning agents.
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2025-03-25 |
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phylophlan
|
public |
PhyloPhlAn is a computational pipeline for reconstructing highly accurate and resolved phylogenetic trees based on whole-genome sequence information.
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2025-03-25 |
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melonnpan
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public |
MelonnPan is a computational method for predicting metabolite compositions from shotgun metagenomic sequencing data.
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2025-03-25 |
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r-phylogic
|
public |
Phylogenetic analysis of subclones across multiple cancer-tissue samples.
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2025-03-25 |
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gdc-client
|
public |
GDC Data Transfer Tool
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2025-03-25 |
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azcopy
|
public |
AzCopy is a command-line utility designed for copying data to/from Microsoft Azure Blob and File storage, using simple commands designed for optimal performance.
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2025-03-25 |
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titancna
|
public |
Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer.
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2025-03-25 |
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sports1.0
|
public |
Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs.
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2025-03-25 |
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sandstone-spawner
|
public |
JupyterHub Spawner class for starting Sandstone HPC user instances.
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2025-03-25 |
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sandstone-slurm-assist
|
public |
This is modified Slurm scheduler assist app for Sandstone IDE on HCC resources.
|
2025-03-25 |
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sandstone-jupyterhub-login
|
public |
This is modified JupyterHub multi-user spawner for Sandstone IDE on HCC resources.
|
2025-03-25 |
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jupyter-duoauthenticator
|
public |
Simple Duo Authenticator Plugin for JupyterHub.
|
2025-03-25 |
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sandstone-ide
|
public |
This is modified Sandstone IDE for HCC resources.
|
2025-03-25 |
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wrapspawner
|
public |
Mechanism for runtime configuration of spawners for JupyterHub.
|
2025-03-25 |
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batchspawner
|
public |
This is modified batchspawner for Jupyterhub on HCC resources.
|
2025-03-25 |
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hcc-du
|
public |
HCC utility to query quota and file purge status.
|
2025-03-25 |
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duo_python
|
public |
Duo two-factor authentication for Python web applications.
|
2025-03-25 |
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simplepam
|
public |
An interface to the Pluggable Authentication Modules (PAM) library on linux, written in pure python (using ctypes).
|
2025-03-25 |
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bitmath
|
public |
Pythonic module for representing and manipulating file sizes with different prefix notations (file size unit conversion).
|
2025-03-25 |
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r-phia
|
public |
Analysis of terms in linear, generalized and mixed linear models, on the basis of multiple comparisons of factor contrasts. Specially suited for the analysis of interaction terms.
|
2025-03-25 |
