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sequeltools
|
public |
A suite of tools for working with PacBio Sequel raw sequence data.
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2025-03-26 |
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deepmriprep
|
public |
Neural network-based preprocessing of MRI data. Prepping brain images in seconds.
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2025-03-25 |
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torchreg
|
public |
Lightweight image registration library using PyTorch
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2025-03-25 |
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deepbet
|
public |
Fast brain extraction using neural networks
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2025-03-25 |
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fill-voids
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public |
Fill voids in 3D binary images fast.
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2025-03-25 |
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fpocket
|
public |
fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation.
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2025-03-25 |
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sequencetubemap
|
public |
Displays multiple genomic sequences in the form of a tube map.
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2025-03-25 |
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lumpy
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public |
The LumPy toolset provides a proof of concept for lumping for DBMF/PA/AME equations for contact processes on complex networks.
|
2025-03-25 |
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vcfstats
|
public |
Powerful statistics for VCF files
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2025-03-25 |
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vcfsort
|
public |
Sorts a VCF file (for human) by chromosome.
|
2025-03-25 |
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datar
|
public |
A Grammar of Data Manipulation in python
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2025-03-25 |
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simplug
|
public |
A simple plugin system for python with async hooks supported
|
2025-03-25 |
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plotnine-prism
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public |
Prism themes for plotnine, inspired by ggprism
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2025-03-25 |
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mumaxplus
|
public |
More versatile and extensible GPU-accelerated micromagnetic simulator.
|
2025-03-25 |
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argx
|
public |
Super-charged argparse for python
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2025-03-25 |
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rtoml
|
public |
A better TOML library for python implemented in rust.
|
2025-03-25 |
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python-simpleconf
|
public |
Simple configuration management with python.
|
2025-03-25 |
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sniffles2-plot
|
public |
Visualizer tool for plot generating
|
2025-03-25 |
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compass-cplex
|
public |
In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes.
|
2025-03-25 |
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gsufsort
|
public |
Building suffix arrays, LCP-arrays and BWTs for string collections.
|
2025-03-25 |
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biser
|
public |
Fast Characterization of Segmental Duplication Structure in Multiple Genome Assemblies.
|
2025-03-25 |
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seq
|
public |
Seq — the bioinformatics module for Codon.
|
2025-03-25 |
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codon
|
public |
A high-performance, zero-overhead, extensible Python compiler using LLVM.
|
2025-03-25 |
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freesasa-cli
|
public |
Calculate solvent accessible surface areas of proteins
|
2025-03-25 |
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juicer
|
public |
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments.
|
2025-03-25 |
