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bash-kernel
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public |
A bash kernel for Jupyter
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2025-03-25 |
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cellranger
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public |
Cell Ranger is a set of analysis pipelines that process Chromium single-cell RNA-seq output to align reads, generate feature-barcode matrices and perform clustering and gene expression analysis.
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2025-03-25 |
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bcl2fastq2
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public |
The Illumina bcl2fastq2 Conversion Software v2.20 demultiplexes sequencing data and converts base call (BCL) files into FASTQ files.
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2025-03-25 |
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sumo
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public |
Heavy weight plotting tools for ab initio solid-state calculations.
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2025-03-25 |
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python-ripser
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public |
A Lean Persistent Homology Library for Python
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2025-03-25 |
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matlab-kernel
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public |
Jupyter Kernel for Matlab
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2025-03-25 |
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persim
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public |
Distances and representations of persistence diagrams
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2025-03-25 |
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libxslt
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public |
The XSLT C library developed for the GNOME project.
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2025-03-25 |
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libxml2
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public |
The XML C parser and toolkit of Gnome.
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2025-03-25 |
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fbpca
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public |
Fast computations of PCA/SVD/eigendecompositions via randomized methods.
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2025-03-25 |
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matplotlib
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public |
Publication quality figures in Python
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2025-03-25 |
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defiant
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public |
Differential methylation, Easy, Fast, Identification and ANnoTation.
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2025-03-25 |
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midnight-commander
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public |
GNU Midnight Commander is a visual file manager, licensed under GNU General Public License and therefore qualifies as Free Software. It's a feature rich full-screen text mode application that allows you to copy, move and delete files and whole directory trees, search for files and run commands in the subshell. Internal viewer and editor are included.
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2025-03-25 |
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gpm
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public |
GPM ("General Purpose Mouse") software provides support for mouse devices in Linux virtual consoles.
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2025-03-25 |
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tsne
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public |
TSNE implementations for Python.
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2025-03-25 |
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martian
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public |
Martian is a language and framework for developing and executing complex computational pipelines.
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2025-03-25 |
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globusconnectpersonal
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public |
Globus Connect Personal
|
2025-03-25 |
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tcllib
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public |
This package is intended to be a collection of Tcl packages that provide utility functions useful to large collection of Tcl programmers.
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2025-03-25 |
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maxquant
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public |
MaxQuant is a quantitative proteomics software package designed for analyzing large mass-spectrometric data sets. License restricted.
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2025-03-25 |
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stockfish
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public |
Stockfish is a free, powerful UCI chess engine derived from Glaurung 2.1.
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2025-03-25 |
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justorthologs
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public |
JustOrthologs: a fast, accurate and user-friendly ortholog identification algorithm.
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2025-03-25 |
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morgan
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public |
MORGAN is part of our software for Markov chain Monte Carlo in Genetic Analysis.
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2025-03-25 |
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jvarkit-vcf2bam
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public |
Converts VCF to BAM files
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2025-03-25 |
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mro-data.table
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public |
Fast aggregation of large data (e.g. 100GB in RAM), fast ordered joins, fast add/modify/delete of columns by group using no copies at all, list columns, friendly and fast character-separated-value read/write. Offers a natural and flexible syntax, for faster development.
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2025-03-25 |
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abacas
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public |
ABACAS is intended to rapidly contiguate (align, order, orientate), visualize and design primers to close gaps on shotgun assembled contigs based on a reference sequence.
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2025-03-25 |
