hcc
by Holland Computing Center (Organization)
hcc.unl.edu | [email protected] Depends on: conda-forge, bioconda Source: github_dot_com/unlhcc/hcc-conda-recipes
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| Ranking | Name | Version |
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Usage Instructions
To install packages from this channel, use the channel temporarily with conda or add it to your .condarc file for configured ongoing access. Learn more
- Temporary
- Configured
Packages
| Name | Latest Version | Summary | Updated | License |
|---|
| juicer | 1.6 | A One-Click System for Analyzing Loop-Resolution Hi-C Experiments. | Mar 25, 2025 | MIT |
| togl | 2.0 | A Tcl/Tk widget for OpenGL rendering. | Mar 25, 2025 | BSD |
| jmodeltest | 2.1.10 | jModelTest is a tool to carry out statistical selection of best-fit models of nucleotide substitution. | Mar 25, 2025 | GPLv3 |
| tensorboard-plugin-profile | 2.15.1 | A profiling and performance analysis tool for TensorFlow. | Mar 25, 2025 | Apache-2.0 |
| gviz-api | 1.10.0 | Python API for Google Visualization | Mar 25, 2025 | Apache-2.0 |
| fill-voids | 2.0.8 | Fill voids in 3D binary images fast. | Mar 25, 2025 | LGPL-3.0 AND GPL-3.0 |
| deepemhancer | 0.0.2023.08.23 | Deep learning for cryo-EM maps post-processing. | Mar 25, 2025 | Apache-2.0 |
| compass-cplex | 0.2025.03.25 | In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes. | Feb 4, 2026 | BSD-3-Clause |
| cnvcaller | 0.0.2024.01.18 | CNVcaller is designed to detect copy number variation using sequencing data from populations. | Feb 4, 2026 | GPL-3.0 |
| codon | 0.16.3 | A high-performance, zero-overhead, extensible Python compiler using LLVM. | Mar 25, 2025 | BSL1.1 |
| pysages | 0.4.0 | Python Suite for Advanced General Ensemble Simulations. | Mar 25, 2025 | GPL-3.0-or-later AND MIT |
| starfile | 0.5.13 | STAR file I/O in Python | Dec 2, 2025 | BSD-3-Clause |
| poplddecay | 3.42 | Fast and effective tool for linkage disequilibrium decay analysis. | Mar 25, 2025 | MIT |
| mrtrix3tissue | 5.2.9 | MRtrix3Tissue adds capabilities for 3-Tissue CSD modelling and analysis to a complete version of MRtrix3. | Feb 4, 2026 | MPL-2.0 |
| seq | 0.11.3 | Seq — the bioinformatics module for Codon. | Mar 25, 2025 | Apache 2.0 |
| rtoml | 0.8.0 | A better TOML library for python implemented in rust. | Mar 25, 2025 | MIT |
| mumaxplus | 1.0.0 | More versatile and extensible GPU-accelerated micromagnetic simulator. | Mar 25, 2025 | GPL-3 |
| biser | 1.4 | Fast Characterization of Segmental Duplication Structure in Multiple Genome Assemblies. | Mar 25, 2025 | MIT |
| sniffles2-plot | 0.2.1 | Visualizer tool for plot generating | Mar 25, 2025 | None |
| sequencetubemap | 0.0.2025.01.28 | Displays multiple genomic sequences in the form of a tube map. | Mar 25, 2025 | MIT |
| bioemu | 1.1.0 | Inference code for scalable emulation of protein equilibrium ensembles with generative deep learning. | Feb 4, 2026 | MIT AND Apache-2.0 |
| consurf | 1.0.0 | Stand Alone version of ConSurf | Mar 25, 2025 | Custom OSS |
| isonclust3 | 0.3.0 | De novo clustering of long transcript reads into genes. | Jul 7, 2025 | GPL-3.0 |
| fpocket | 4.2.2 | fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. | Mar 25, 2025 | MIT |
| dynamight | 0.0.2025.09.17 | Tool for reconstruction and analysis of continuous heterogeneity of a cryo-EM dataset. | Feb 7, 2026 | BSD-3-Clause |