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Package implementing EPIC method to estimate the proportion of immune, stromal, endothelial and cancer or other cells from bulk gene expression data. It is based on reference gene expression profiles for the main non-malignant cell types and it predicts the proportion of these cells and of the remaining "other cells" (that are mostly cancer cells) for which no reference profile is given.

Installers

  • linux-64 v1.1

conda install

To install this package run one of the following:
conda install grst::r-epic
conda install grst/label/broken::r-epic

Description


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