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hg19-gene-features-with-introns-ensembl-v1
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public |
Gene features, including all annotated transcripts, that make up the Ensembl gene sets. Intron features for each transcripts have been added to the annotation set. (Alignment based annotation using proteins, cDNA, RNA-seq, etc.). Features include: CDS, Selenocysteine, UTR, exon, gene, intron, start_codon, stop_codon, and transcript. Features are in GTF format. Remapped from Ensembl GRCh37 to UCSC hg19
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2025-03-25 |
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grch38-intron-features-ensembl-v1
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public |
Intron features created from the Ensembl gene features, including all annotated transcripts, that make up the Ensembl gene sets. Intron features for each transcripts have been added to the annotation set. All other features are removed. (Alignment based annotation using proteins, cDNA, RNA-seq, etc.). Features include: intron. Features are in GTF format.
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2025-03-25 |
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grch38-gene-features-with-introns-ensembl-v1
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public |
Gene features, including all annotated transcripts, that make up the Ensembl gene sets. Intron features for each transcripts have been added to the annotation set. (Alignment based annotation using proteins, cDNA, RNA-seq, etc.). Features include: CDS, Selenocysteine, UTR, exon, gene, intron, start_codon, stop_codon, and transcript. Features are in GTF format
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2025-03-25 |
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grch37-intron-features-ensembl-v1
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public |
Intron features created from the Ensembl gene features, including all annotated transcripts, that make up the Ensembl gene sets. Intron features for each transcripts have been added to the annotation set. All other features are removed. (Alignment based annotation using proteins, cDNA, RNA-seq, etc.). Features include: intron. Features are in GTF format.
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2025-03-25 |
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grch37-gene-features-with-introns-ensembl-v1
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public |
Gene features, including all annotated transcripts, that make up the Ensembl gene sets. Intron features for each transcripts have been added to the annotation set. (Alignment based annotation using proteins, cDNA, RNA-seq, etc.). Features include: CDS, Selenocysteine, UTR, exon, gene, intron, start_codon, stop_codon, and transcript. Features are in GTF format.
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2025-03-25 |
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hg38-polya-annotations-chr-regions-gencode-v1
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public |
PolyA feature annotation. It contains the polyA features (polyA_signal, polyA_site, pseudo_polyA) manually annotated by HAVANA on the reference chromosomes. This dataset does not form part of the main annotation file
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2025-03-25 |
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grch38-polya-annotations-chr-regions-gencode-v1
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public |
PolyA feature annotation. It contains the polyA features (polyA_signal, polyA_site, pseudo_polyA) manually annotated by HAVANA on the reference chromosomes. This dataset does not form part of the main annotation file
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2025-03-25 |
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hg38-transcript-sequences-protein-coding-chr-regions-gencode-v1
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public |
Nucleotide sequences of protein-coding transcripts on the reference chromosomes
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2025-03-25 |
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hg19-transcript-sequences-protein-coding-chr-regions-gencode-v1
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public |
Nucleotide sequences of protein-coding transcripts on the reference chromosomes
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2025-03-25 |
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grch38-transcript-sequences-protein-coding-chr-regions-gencode-v1
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public |
Nucleotide sequences of protein-coding transcripts on the reference chromosomes
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2025-03-25 |
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grch37-transcript-sequences-protein-coding-chr-regions-gencode-v1
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public |
Nucleotide sequences of protein-coding transcripts on the reference chromosomes
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2025-03-25 |
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hg38-predicted-trna-annotations-chr-regions-gencode-v1
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public |
Predicted tRNA genes. tRNA genes predicted by ENSEMBL on the reference chromosomes using tRNAscan-SE. This dataset does not form part of the main annotation file.
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2025-03-25 |
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grch38-predicted-trna-annotations-chr-regions-gencode-v1
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public |
Predicted tRNA genes. tRNA genes predicted by ENSEMBL on the reference chromosomes using tRNAscan-SE. This dataset does not form part of the main annotation file.
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2025-03-25 |
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hg38-consensus-pseudogene-annotations-chr-regions-gencode-v1
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public |
Consensus pseudogenes predicted by the Yale and UCSC pipelines. 2-way consensus (retrotransposed) pseudogenes predicted by the Yale and UCSC pipelines, but not by HAVANA, on the reference chromosomes. This dataset does not form part of the main annotation file.
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2025-03-25 |
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grch38-consensus-pseudogene-annotations-chr-regions-gencode-v1
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public |
Consensus pseudogenes predicted by the Yale and UCSC pipelines. 2-way consensus (retrotransposed) pseudogenes predicted by the Yale and UCSC pipelines, but not by HAVANA, on the reference chromosomes. This dataset does not form part of the main annotation file.
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2025-03-25 |
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hg38-transcript-sequences-chr-regions-gencode-v1
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public |
Transcript sequences. Nucleotide sequences of all transcripts on the reference chromosomes
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2025-03-25 |
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hg19-transcript-sequences-chr-regions-gencode-v1
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public |
Transcript sequences. Nucleotide sequences of all transcripts on the reference chromosomes
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2025-03-25 |
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grch38-transcript-sequences-chr-regions-gencode-v1
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public |
Transcript sequences. Nucleotide sequences of all transcripts on the reference chromosomes
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2025-03-25 |
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grch37-transcript-sequences-chr-regions-gencode-v1
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public |
Transcript sequences. Nucleotide sequences of all transcripts on the reference chromosomes
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2025-03-25 |
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hg38-lncrna-annotations-chr-regions-gencode-v1
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public |
Long non-coding RNA gene annotation. It contains the comprehensive gene annotation of lncRNA genes on the reference chromosomes. This is a subset of the main annotation file
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2025-03-25 |
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hg19-lncrna-annotations-chr-regions-gencode-v1
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public |
Long non-coding RNA gene annotation. It contains the comprehensive gene annotation of lncRNA genes on the reference chromosomes. This is a subset of the main annotation file
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2025-03-25 |
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grch38-lncrna-annotations-chr-regions-gencode-v1
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public |
Long non-coding RNA gene annotation. It contains the comprehensive gene annotation of lncRNA genes on the reference chromosomes. This is a subset of the main annotation file
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2025-03-25 |
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grch37-lncrna-annotations-chr-regions-gencode-v1
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public |
Long non-coding RNA gene annotation. It contains the comprehensive gene annotation of lncRNA genes on the reference chromosomes. This is a subset of the main annotation file
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2025-03-25 |
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hg38-amino-acid-sequences-chr-regions-gencode-v1
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public |
Protein-coding transcript translation sequences. Amino acid sequences of coding transcript translations on the reference chromosomes
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2025-03-25 |
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hg19-amino-acid-sequences-chr-regions-gencode-v1
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public |
Protein-coding transcript translation sequences. Amino acid sequences of coding transcript translations on the reference chromosomes
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2025-03-25 |
