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ggd-genomics / packages

Package Name Access Summary Updated
grch38-amino-acid-sequences-chr-regions-gencode-v1 public Protein-coding transcript translation sequences. Amino acid sequences of coding transcript translations on the reference chromosomes 2025-03-25
grch37-amino-acid-sequences-chr-regions-gencode-v1 public Protein-coding transcript translation sequences. Amino acid sequences of coding transcript translations on the reference chromosomes 2025-03-25
hg38-lncrna-sequences-chr-regions-gencode-v1 public Long non-coding RNA transcript sequences for CHR regions. Nucleotide sequences of long non-coding RNA transcripts on the reference chromosomes 2025-03-25
hg19-lncrna-sequences-chr-regions-gencode-v1 public Long non-coding RNA transcript sequences for CHR regions. Nucleotide sequences of long non-coding RNA transcripts on the reference chromosomes 2025-03-25
grch38-lncrna-sequences-chr-regions-gencode-v1 public Long non-coding RNA transcript sequences for CHR regions. Nucleotide sequences of long non-coding RNA transcripts on the reference chromosomes 2025-03-25
grch37-lncrna-sequences-chr-regions-gencode-v1 public Long non-coding RNA transcript sequences for CHR regions. Nucleotide sequences of long non-coding RNA transcripts on the reference chromosomes 2025-03-25
hg38-reference-genome-gencode-v1 public Genome sequence, primary assembly. Nucleotide sequence of the hg38 primary genome assembly (chromosomes and scaffolds) 2025-03-25
hg38-reference-genome-all-gencode-v1 public Genome sequence. Nucleotide sequence of the hg38.p13 genome assembly version on all regions, including reference chromosomes, scaffolds, assembly patches and haplotypes 2025-03-25
grch38-reference-genome-gencode-v1 public Genome sequence, primary assembly. Nucleotide sequence of the GRCh38 primary genome assembly (chromosomes and scaffolds) 2025-03-25
grch38-reference-genome-all-gencode-v1 public Genome sequence. Nucleotide sequence of the GRCh38.p13 genome assembly version on all regions, including reference chromosomes, scaffolds, assembly patches and haplotypes 2025-03-25
hg38-structural-variants-database-genomic-variants-ucsc-v1 public Database of Genomic Variants incorporating dbVar, July 2013 and later 2025-03-25
hg19-structural-variants-database-genomic-variants-ucsc-v1 public Database of Genomic Variants incorporating dbVar, July 2013 and later 2025-03-25
grch38-structural-variants-database-genomic-variants-ucsc-v1 public Database of Genomic Variants incorporating dbVar, July 2013 and later 2025-03-25
grch37-structural-variants-database-genomic-variants-ucsc-v1 public Database of Genomic Variants incorporating dbVar, July 2013 and later 2025-03-25
hg38-cancer-genes-futreal-v1 public CDS region genomic coordinates, along with complement coordinates, for a manually curated set of cancer genes from Futreal et al. https://www.nature.com/articles/nrc1299. Gene symbols manually extracted from the supplemental PDF table here: https://media.nature.com/original/nature-assets/nrc/journal/v4/n3/extref/nrc1299-S1.pdf. Gene symbols manually translated to HGNC nomeclature. 2025-03-25
hg19-cancer-genes-futreal-v1 public CDS region genomic coordinates, along with complement coordinates, for a manually curated set of cancer genes from Futreal et al. https://www.nature.com/articles/nrc1299. Gene symbols manually extracted from the supplemental PDF table here: https://media.nature.com/original/nature-assets/nrc/journal/v4/n3/extref/nrc1299-S1.pdf. Gene symbols manually translated to HGNC nomeclature. 2025-03-25
grch38-cancer-genes-futreal-v1 public CDS region genomic coordinates, along with complement coordinates, for a manually curated set of cancer genes from Futreal et al. https://www.nature.com/articles/nrc1299. Gene symbols manually extracted from the supplemental PDF table here: https://media.nature.com/original/nature-assets/nrc/journal/v4/n3/extref/nrc1299-S1.pdf. Gene symbols manually translated to HGNC nomeclature. 2025-03-25
grch37-cancer-genes-futreal-v1 public CDS region genomic coordinates, along with complement coordinates, for a manually curated set of cancer genes from Futreal et al. https://www.nature.com/articles/nrc1299. Gene symbols manually extracted from the supplemental PDF table here: https://media.nature.com/original/nature-assets/nrc/journal/v4/n3/extref/nrc1299-S1.pdf. Gene symbols manually translated to HGNC nomeclature. 2025-03-25
hg38-structural-variants-bedpe-ccdg-v1 public SV callset 2 from ccdg in hg38, bedpe format 2025-03-25
hg19-structural-variants-bedpe-ccdg-v1 public SV callset 2 from ccdg in grch37, bedpe format 2025-03-25
grch38-structural-variants-bedpe-ccdg-v1 public SV callset 2 from ccdg in hg38, bedpe format 2025-03-25
grch37-structural-variants-bedpe-ccdg-v1 public SV callset 2 from ccdg in grch37, bedpe format 2025-03-25
hg38-liftover-chain-19-to-38-ucsc-v1 public Liftover chain file from UCSC 2025-03-25
hg19-liftover-chain-38-to-19-ucsc-v1 public Liftover chain file from UCSC 2025-03-25
hg19-hg002-svs-giab-v1 public SV callset for the Ashkenazi trio son HG002 in hg19 2025-03-25

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