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grch38-hg004-chr22-illumina-giab-v1
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public |
Illumina paired-end sequencing alignments from HG004, downloaded from GIAB, and subset to 30X for chr22. Usable as an example dataset
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2025-03-25 |
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grch38-hg003-chr22-illumina-giab-v1
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public |
Illumina paired-end sequencing alignments from HG003, downloaded from GIAB, and subset to 30X for chr22. Usable as an example dataset
|
2025-03-25 |
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grch38-hg002-chr22-illumina-giab-v1
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public |
Illumina paired-end sequencing alignments from HG002, downloaded from GIAB, and subset to 30X for chr22. Usable as an example dataset
|
2025-03-25 |
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grch37-hg004-pb-chr22-giab-v1
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public |
GiaB PacBio 30x sequencing for chromosome 22 in ashkenazi sample HG004
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2025-03-25 |
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grch37-hg003-pb-chr22-giab-v1
|
public |
GiaB PacBio 30x sequencing for chromosome 22 in ashkenazi sample HG003
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2025-03-25 |
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grch37-hg002-pb-chr22-giab-v1
|
public |
GiaB PacBio 70x sequencing for chromosome 22 in ashkenazi sample HG002
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2025-03-25 |
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hg38-chromsizes-ggd-v1
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public |
Chromosome lengths for hg38
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2025-03-25 |
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hg19-chromsizes-ggd-v1
|
public |
Chromosome lengths for hg19
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2025-03-25 |
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grch38-chromsizes-ggd-v1
|
public |
Chromosome lengths for GRCh38
|
2025-03-25 |
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grch37-chromsizes-ggd-v1
|
public |
Chromosome lengths for GRCh37
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2025-03-25 |
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grch37-scores-by-amino-acid-change-ggd-v1
|
public |
missense badnass, blosum, grantham scores foreach amino acid change
|
2025-03-25 |
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hg38-microsatellites-ucsc-v1
|
public |
Microsatellites from UCSC
|
2025-03-25 |
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hg38-cytobands-ucsc-v1
|
public |
Cytobands from UCSC
|
2025-03-25 |
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hg19-microsatellites-ucsc-v1
|
public |
Microsatellites from UCSC
|
2025-03-25 |
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hg19-cytobands-ucsc-v1
|
public |
Cytobands from UCSC
|
2025-03-25 |
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grch37-microsatellites-ucsc-v1
|
public |
Microsatellites from UCSC
|
2025-03-25 |
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grch37-cytobands-ucsc-v1
|
public |
Cytobands from UCSC
|
2025-03-25 |
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hg19-pfam-domains-ucsc-v1
|
public |
Pfam domain annotation in bed12 format. (From UCSC)
|
2025-03-25 |
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grch37-pfam-domains-ucsc-v1
|
public |
Pfam domain annotation in bed12 format. (From UCSC) Remapped from hg19 to GRCh37 (unmapped regions removed)
|
2025-03-25 |
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danrer10-gtf-refseq-ucsc-v1
|
public |
The UCSC RefSeq gene track converted into GTF format containing known zebrafish protein-coding and non-protein-coding genes from RefSeq. (RefSeq: NCBI RNA reference sequence collection) (UCSC GTF format info: https://genome.ucsc.edu/FAQ/FAQformat.html#format3)
|
2025-03-25 |
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danrer10-gtf-ensembl-v1
|
public |
The GRCz10 gtf file from ensembl remapped to danRer10 (Any unmapped entries are removed from the file)
|
2025-03-25 |
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grch37-evofold-ucsc-v1
|
public |
The evolutionary conserved mRNA secondary structure predictions hosted on UCSC (Evofold). In bed format. (This file has been remapped from hg19 to GRCh37 with any unmappable contigs removed)
|
2025-03-25 |
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grch37-vcf-2.1-exome-gnomad-v1
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public |
The gnomAD whole exome vcf file. Version 2.1.1 released on March 6, 2019. VCF file includes all non-neuro, non-cancer, controls-only, and non-TOPMed samples. (https://gnomad.broadinstitute.org/downloads)
|
2025-03-25 |
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mm10-reference-ucsc-v1
|
public |
Reference genome for mouse from UCSC
|
2025-03-25 |
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grcz11-reference-genome-ensembl-v1
|
public |
The GRCz11 release 96 reference genome from Ensembl
|
2025-03-25 |
