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hg19-somatic-variants-ensembl-v1
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public |
All known somatic mutations at the time of Ensembl release 75. Conseqeunces for each variant are included in the annotation. Decomposed and Normalized. Remapped from Ensembl GRCh37 to UCSC hg19. Ensembl variant info page can be found at: https://uswest.ensembl.org/info/genome/variation/index.html
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2025-03-25 |
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grch38-somatic-variants-ensembl-v1
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public |
All known somatic mutations at the time of Ensembl release 99. Conseqeunces for each variant are included in the annotation. Decomposed and Normalized. Ensembl variant info page can be found at: https://uswest.ensembl.org/info/genome/variation/index.html
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2025-03-25 |
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grch37-somatic-variants-ensembl-v1
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public |
All known somatic mutations at the time of Ensembl release 75. Conseqeunces for each variant are included in the annotation. Decomposed and Normalized. Ensembl variant info page can be found at: https://uswest.ensembl.org/info/genome/variation/index.html
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2025-03-25 |
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hg38-radar-li-lab-stanford-v1
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public |
**Liftover** Rigorously Annotated Database of A-to-I RNA Editing (RADAR). A comprehensive collection of Adenosine (A) to Inosine (I) editing sites in human transcripts, otherwise known as RNA editing sites. Paper: http://nar.oxfordjournals.org/content/42/D1/D109. Liftover from hg19 to hg38
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2025-03-25 |
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hg19-radar-li-lab-stanford-v1
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public |
Rigorously Annotated Database of A-to-I RNA Editing (RADAR). A comprehensive collection of Adenosine (A) to Inosine (I) editing sites in human transcripts, otherwise known as RNA editing sites. Paper: http://nar.oxfordjournals.org/content/42/D1/D109
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2025-03-25 |
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grch38-radar-li-lab-stanford-v1
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public |
**Liftover** Rigorously Annotated Database of A-to-I RNA Editing (RADAR). A comprehensive collection of Adenosine (A) to Inosine (I) editing sites in human transcripts, otherwise known as RNA editing sites. Paper: http://nar.oxfordjournals.org/content/42/D1/D109. Liftover from hg19 to hg38. Remapped from UCSC hg38 to Ensembl GRCh38
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2025-03-25 |
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grch37-radar-li-lab-stanford-v1
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public |
Rigorously Annotated Database of A-to-I RNA Editing (RADAR). A comprehensive collection of Adenosine (A) to Inosine (I) editing sites in human transcripts, otherwise known as RNA editing sites. Paper: http://nar.oxfordjournals.org/content/42/D1/D109. Remapped from UCSC hg19 to Ensembl GRCh37
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2025-03-25 |
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hg38-gene-features-ensembl-v1
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public |
Gene features, including all annotated transcripts, that make up the Ensembl gene sets. (Alignment based annotation using proteins, cDNA, RNA-seq, etc.). Features are in GTF format. Remapped from Ensembl GRCh38 to UCSC hg38
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2025-03-25 |
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hg19-gene-features-ensembl-v1
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public |
Gene features, including all annotated transcripts, that make up the Ensembl gene sets. (Alignment based annotation using proteins, cDNA, RNA-seq, etc.). Features are in GTF format. Remapped from Ensembl GRCh37 to UCSC hg19
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2025-03-25 |
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grch38-gene-features-ensembl-v1
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public |
Gene features, including all annotated transcripts, that make up the Ensembl gene sets. (Alignment based annotation using proteins, cDNA, RNA-seq, etc.). Features are in GTF format.
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2025-03-25 |
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grch37-gene-features-ensembl-v1
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public |
Gene features, including all annotated transcripts, that make up the Ensembl gene sets. (Alignment based annotation using proteins, cDNA, RNA-seq, etc.). Features are in GTF format.
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2025-03-25 |
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hg38-refseq-gene-features-ucsc-v1
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public |
The UCSC RefSeq gene track converted into GTF format containing known human protein-coding and non-protein-coding genes from RefSeq. (RefSeq: NCBI RNA reference sequence collection)
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2025-03-25 |
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hg19-refseq-gene-features-ucsc-v1
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public |
The UCSC RefSeq gene track converted into GTF format containing known human protein-coding and non-protein-coding genes from RefSeq. (RefSeq: NCBI RNA reference sequence collection)
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2025-03-25 |
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grch38-refseq-gene-features-ucsc-v1
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public |
The UCSC RefSeq gene track converted into GTF format containing known human protein-coding and non-protein-coding genes from RefSeq. (RefSeq: NCBI RNA reference sequence collection). Remapped from UCSC hg38 to Ensembl GRCh38
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2025-03-25 |
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grch37-refseq-gene-features-ucsc-v1
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public |
The UCSC RefSeq gene track converted into GTF format containing known human protein-coding and non-protein-coding genes from RefSeq. (RefSeq: NCBI RNA reference sequence collection). Remapped from UCSC hg19 to Ensembl GRCh37
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2025-03-25 |
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hg38-trna-genes-ucsc-v1
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public |
tRNA gene predictions from tRNAscan-SE v1.23 hosted on UCSC.
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2025-03-25 |
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hg19-trna-genes-ucsc-v1
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public |
tRNA gene predictions from tRNAscan-SE v1.23 hosted on UCSC.
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2025-03-25 |
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grch38-trna-genes-ucsc-v1
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public |
tRNA gene predictions from tRNAscan-SE v1.23 hosted on UCSC. Remapped from UCSC hg38 to Ensembl GRCh38
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2025-03-25 |
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grch37-trna-genes-ucsc-v1
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public |
tRNA gene predictions from tRNAscan-SE v1.23 hosted on UCSC. Remapped from UCSC hg19 to Ensembl GRCh37
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2025-03-25 |
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hg38-canonical-isoforms-ucsc-v1
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public |
The Canonical Isofrom for each gene (or cluster) from UCSC. The APPRIS principal transcripts are used to define the canonical transcripts. If APPRIS filtering results in no transcripts, the longest isofrom is selected.
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2025-03-25 |
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hg19-canonical-isoforms-ucsc-v1
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public |
UCSC defined Canonical Isoform for each gene (or cluster). This tends to be the longest isoform.
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2025-03-25 |
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grch38-canonical-isoforms-ucsc-v1
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public |
The Canonical Isofrom for each gene (or cluster) from UCSC. The APPRIS principal transcripts are used to define the canonical transcripts. If APPRIS filtering results in no transcripts, the longest isofrom is selected. Remapped from UCSC hg38 to Ensembl GRCh38
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2025-03-25 |
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grch37-canonical-isoforms-ucsc-v1
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public |
UCSC defined Canonical Isoform for each gene (or cluster). This tends to be the longest isoform. Remapped from UCSC hg19 to Ensembl GRCh37
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2025-03-25 |
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hg38-ccds-genes-ucsc-v1
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public |
Consensus Coding Seqeunce (CCDS) high confidence gene annotation from UCSC. The annotation here are high quality manually curated protein-coding regions from the Consensus CDS project.
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2025-03-25 |
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hg19-ccds-genes-ucsc-v1
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public |
Consensus Coding Seqeunce (CCDS) high confidence gene annotation from UCSC. The annotation here are high quality manually curated protein-coding regions from the Consensus CDS project.
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2025-03-25 |
