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r-corehunter
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public |
Core Hunter is a tool to sample diverse, representative subsets from large germplasm collections, with minimum redundancy. Such so-called core collections have applications in plant breeding and genetic resource management in general. Core Hunter can construct cores based on genetic marker data, phenotypic traits or precomputed distance matrices, optimizing one of many provided evaluation measures depending on the precise purpose of the core (e.g. high diversity, representativeness, or allelic richness). In addition, multiple measures can be simultaneously optimized as part of a weighted index to bring the different perspectives closer together. The Core Hunter library is implemented in Java 8 as an open source project (see <http://www.corehunter.org>).
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2025-03-25 |
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openmpi
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public |
OpenMPI for genomedk
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2025-03-25 |
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libgcc-7
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public |
Shared libraries for the GNU Compiler Collection
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2025-03-25 |
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gcc-7
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public |
The GNU Compiler Collection
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2025-03-25 |
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guidance
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public |
No Summary
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2025-03-25 |
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gctb
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public |
No Summary
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2025-03-25 |
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deepvariant
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public |
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data
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2025-03-25 |
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parsimonious
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public |
(Soon to be) the fastest pure-Python PEG parser I could muster
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2025-03-25 |
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hail
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public |
Hail is an open-source, general-purpose, Python-based data analysis tool with additional data types and methods for working with genomic data.
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2025-03-25 |
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spark-cluster
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public |
spark-cluster with setup scrypts for genomedk
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2025-03-25 |
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vim
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public |
No Summary
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2025-03-25 |
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polydfe
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public |
No Summary
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2025-03-25 |
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raxml-ng
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public |
RAxML-NG is a phylogenetic tree inference tool which uses maximum-likelihood (ML) optimality criterion.
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2025-03-25 |
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pasta
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public |
An implementation of the PASTA (Practical Alignment using Sate and TrAnsitivity) algorithm
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2025-03-25 |
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sanger-panito
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public |
No Summary
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2025-03-25 |
