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r-lolcat
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public |
Miscellaneous statistical functions written/ported by Mike Burr
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2025-03-25 |
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r-corpus.jss.papers
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public |
Dublin Core metadata for papers published in the Journal of Statistical Software (JSS, <https://www.jstatsoft.org>).
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2025-03-25 |
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r-xergm
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public |
Extensions of Exponential Random Graph Models (ERGM): Temporal Exponential Random Graph Models (TERGM), Generalized Exponential Random Graph Models (GERGM), Temporal Network Autocorrelation Models (TNAM), and Relational Event Models (REM). This package acts as a meta-package for several sub-packages on which it depends.
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2025-03-25 |
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r-statnet
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Statnet is a collection of packages for statistical network analysis that are designed to work together because they share common data representations and 'API' design. They provide an integrated set of tools for the representation, visualization, analysis, and simulation of many different forms of network data. This package is designed to make it easy to install and load the key 'statnet' packages in a single step. Learn more about 'statnet' at <http://www.statnet.org>. For an introduction to functions in this package, type help(package='statnet').
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2025-03-25 |
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r-btergm
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public |
Temporal Exponential Random Graph Models (TERGM) estimated by maximum pseudolikelihood with bootstrapped confidence intervals or Markov Chain Monte Carlo maximum likelihood. Goodness of fit assessment for ERGMs, TERGMs, and SAOMs. Micro-level interpretation of ERGMs and TERGMs.
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2025-03-25 |
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r-tergm
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public |
An integrated set of extensions to the 'ergm' package to analyze and simulate network evolution based on exponential-family random graph models (ERGM). 'tergm' is a part of the 'statnet' suite of packages for network analysis.
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2025-03-25 |
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r-epimodel
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public |
Tools for simulating mathematical models of infectious disease dynamics. Epidemic model classes include deterministic compartmental models, stochastic individual-contact models, and stochastic network models. Network models use the robust statistical methods of exponential-family random graph models (ERGMs) from the Statnet suite of software packages in R. Standard templates for epidemic modeling include SI, SIR, and SIS disease types. EpiModel features an API for extending these templates to address novel scientific research aims.
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2025-03-25 |
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r-stm
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public |
The Structural Topic Model (STM) allows researchers to estimate topic models with document-level covariates. The package also includes tools for model selection, visualization, and estimation of topic-covariate regressions. Methods developed in Roberts et al (2014) <doi:10.1111/ajps.12103> and Roberts et al (2016) <doi:10.1080/01621459.2016.1141684>.
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2025-03-25 |
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r-quanteda
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public |
A fast, flexible, and comprehensive framework for quantitative text analysis in R. Provides functionality for corpus management, creating and manipulating tokens and ngrams, exploring keywords in context, forming and manipulating sparse matrices of documents by features and feature co-occurrences, analyzing keywords, computing feature similarities and distances, applying content dictionaries, applying supervised and unsupervised machine learning, visually representing text and text analyses, and more.
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2025-03-25 |
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r-globaltest
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The global test tests groups of covariates (or features) for association with a response variable. This package implements the test with diagnostic plots and multiple testing utilities, along with several functions to facilitate the use of this test for gene set testing of GO and KEGG terms.
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2025-03-25 |
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r-annotationdbi
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public |
Provides user interface and database connection code for annotation data packages using SQLite data storage.
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2025-03-25 |
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r-annotate
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public |
Using R enviroments for annotation.
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2025-03-25 |
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r-rgraphviz
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public |
Interfaces R with the AT and T graphviz library for plotting R graph objects from the graph package.
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2025-03-25 |
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r-iranges
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public |
Provides efficient low-level and highly reusable S4 classes for storing, manipulating and aggregating over annotated ranges of integers. Implements an algebra of range operations, including efficient algorithms for finding overlaps and nearest neighbors. Defines efficient list-like classes for storing, transforming and aggregating large grouped data, i.e., collections of atomic vectors and DataFrames.
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2025-03-25 |
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r-affy
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The package contains functions for exploratory oligonucleotide array analysis. The dependence on tkWidgets only concerns few convenience functions. 'affy' is fully functional without it.
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2025-03-25 |
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r-tmap
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Thematic maps are geographical maps in which spatial data distributions are visualized. This package offers a flexible, layer-based, and easy to use approach to create thematic maps, such as choropleths and bubble maps.
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2025-03-25 |
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r-marray
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public |
Class definitions for two-color spotted microarray data. Fuctions for data input, diagnostic plots, normalization and quality checking.
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2025-03-25 |
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r-s4vectors
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public |
The S4Vectors package defines the Vector and List virtual classes and a set of generic functions that extend the semantic of ordinary vectors and lists in R. Package developers can easily implement vector-like or list-like objects as concrete subclasses of Vector or List. In addition, a few low-level concrete subclasses of general interest (e.g. DataFrame, Rle, and Hits) are implemented in the S4Vectors package itself (many more are implemented in the IRanges package and in other Bioconductor infrastructure packages).
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2025-03-25 |
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r-graph
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A package that implements some simple graph handling capabilities.
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2025-03-25 |
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r-crch
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Different approaches to censored or truncated regression with conditional heteroscedasticity are provided. First, continuous distributions can be used for the (right and/or left censored or truncated) response with separate linear predictors for the mean and variance. Second, cumulative link models for ordinal data (obtained by interval-censoring continuous data) can be employed for heteroscedastic extended logistic regression (HXLR). In the latter type of models, the intercepts depend on the thresholds that define the intervals.
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2025-03-25 |
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r-biobase
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public |
Functions that are needed by many other packages or which replace R functions.
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2025-03-25 |
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r-affyio
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Routines for parsing Affymetrix data files based upon file format information. Primary focus is on accessing the CEL and CDF file formats.
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2025-03-25 |
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r-zlibbioc
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This package uses the source code of zlib-1.2.5 to create libraries for systems that do not have these available via other means (most Linux and Mac users should have system-level access to zlib, and no direct need for this package). See the vignette for instructions on use.
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2025-03-25 |
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r-tmaptools
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public |
Set of tools for reading and processing spatial data. The aim is to supply the workflow to create thematic maps. This package also facilitates 'tmap', the package for visualizing thematic maps.
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2025-03-25 |
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r-textdata
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Provides a framework to download, parse, and store text datasets on the disk and load them when needed. Includes various sentiment lexicons and labeled text data sets for classification and analysis.
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2025-03-25 |
