etetoolkit
by etetoolkit
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Packages
| Name | Latest Version | Summary | Updated | License |
|---|
| ete3 | 3.1.3 | A Python framework for reconstructing, analysing and visualizing phylogenetic trees and multiple sequence alignments. Includes Python API and Phylogenomic tools | Mar 25, 2025 | GPL |
| argtable2 | 2.13 | argtable2 provides a library required by ClustalOmega | Mar 25, 2025 | GPL 2 |
| pmodeltest | 1.4 | — | Mar 25, 2025 | — |
| phylobayes | 4.1c | — | Mar 25, 2025 | — |
| raxml | 8.2.11 | — | Mar 25, 2025 | — |
| slr | 1.4.3 | — | Mar 25, 2025 | — |
| paml | 4.8 | — | Mar 25, 2025 | — |
| mafft | 6.861 | — | Mar 25, 2025 | — |
| phyml | 20160115.patched | — | Mar 25, 2025 | — |
| kalign | 2.03 | — | Mar 25, 2025 | — |
| ete_toolchain | 3.0.0 | — | Mar 25, 2025 | — |
| muscle | 3.8.31 | — | Mar 25, 2025 | — |
| dialigntx | 1.0.2 | — | Mar 25, 2025 | — |
| iqtree | 1.5.5 | — | Mar 25, 2025 | — |
| t_coffee | 11.00 | — | Mar 25, 2025 | — |
| clustalo | 1.2.4 | — | Mar 25, 2025 | — |
| trimal | 1.4 | — | Mar 25, 2025 | — |
| fasttree | 2.1 | — | Mar 25, 2025 | — |
| ete3_external_apps | 2.0.4 | A collection of third-party precompiled open source phylogenetic tools used by the etetoolkit (ete3 build/evol). Includes: FastTree, RAxML, Phyml, Trimal, Pmodeltest, T-Coffee, M-Coffee, Kaling, Prank, Probcons, Muscle, ClustalOmega, Dialign-tx, Mafft, Consel, SLR and Codeml. Source code used at https://github.com/etetoolkit/ext_apps | Mar 25, 2025 | Multiple (OpenSource) |
| ete2 | 2.3.10 | A Python framework for the analysis and visualization of trees. | Mar 25, 2025 | GPL |