| Package Name | Access | Summary | Updated |
|---|---|---|---|
| cerebro | public | Cerebro | 2026-03-12 |
| vircov | public | Vircov | 2026-02-23 |
| mutme | public | No Summary | 2026-02-16 |
| metabuli | public | Metabuli | 2026-01-07 |
| netview | public | NetView Rust | 2025-03-25 |
| cipher | public | Cipher | 2025-03-25 |
| scrubby | public | Scrubby | 2025-03-25 |
| nanoq | public | Minimal but speedy quality control and summaries of nanopore reads | 2025-03-25 |
| pf-core | public | Pathfinder core pipelines for bacterial population genomics | 2025-03-25 |
| ardap | public | Comprehensive resistance detection from WGS | 2025-03-25 |
| sccion | public | Whole genome typing and assembly pipelines for Staphylococcus aureus | 2025-03-25 |
| sketchy | public | Real-time lineage hashing and genotyping of bacterial pathogens using genomic neighbor typing | 2025-03-25 |
| enabrowsertools | public | Sequence data access from the European Nucleotide Archive | 2025-03-25 |
| sslcbs | public | No Summary | 2025-03-25 |
| xmfa2fasta | public | No Summary | 2025-03-25 |
| mauve | public | No Summary | 2025-03-25 |
| raxml-ng | public | RAxML Next Generation - faster, easier-to-use and more flexible. | 2025-03-25 |
| unicycler | public | Unicycler, an assembly pipeline for bacterial genomes, fork to adjust memory for PILON. | 2025-03-25 |
| filtlong | public | No Summary | 2025-03-25 |
| racon | public | Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. This is a support version for Unicycler only and is not converted to Python 3. | 2025-03-25 |
| porechop | public | Porechop: a tool for finding and removing adapters from Oxford Nanopore reads | 2025-03-25 |
| dartqc | public | No Summary | 2025-03-25 |
