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mbtools
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public |
mbtools - toolkit for working with modification BAM files
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2025-03-25 |
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libsass
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public |
A straightforward binding of libsass for Python. Compile Sass/SCSS in Python with no Ruby stack at all!
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2025-03-25 |
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seqkit
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public |
a cross-platform and ultrafast toolkit for FASTA/Q file manipulation
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2025-03-25 |
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pysam
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public |
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
|
2025-03-25 |
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flye
|
public |
Fast and accurate de novo assembler for single molecule sequencing reads
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2025-03-25 |
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minimap2
|
public |
A versatile pairwise aligner for genomic and spliced nucleotide sequences.
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2025-03-25 |
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k8
|
public |
Lightweight JavaScript shell based on Google's V8 JavaScript engine
|
2025-03-25 |
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samtools
|
public |
Tools for dealing with SAM, BAM and CRAM files
|
2025-03-25 |
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htslib
|
public |
C library for high-throughput sequencing data formats.
|
2025-03-25 |
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pore-c-py
|
public |
Python scripts for working with Pore-C data
|
2025-03-25 |
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ezcharts
|
public |
eCharts plotting API
|
2025-03-25 |
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kraken2-server
|
public |
Server implementation of kraken2
|
2025-03-25 |
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pychopper
|
public |
A tool to identify, orient and rescue full length cDNA reads from nanopore data.
|
2025-03-25 |
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sigfig
|
public |
Python library for rounding numbers (with expected results)
|
2025-03-25 |
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modbam2bed
|
public |
Summarise BAM files containing modified-base information to bedMethyl format.
|
2025-03-25 |
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plannotate
|
public |
Webserver and command line tool for annotating engineered plasmids
|
2025-03-25 |
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epi2melabs
|
public |
Helper library for miscellaneous EPI2ME Labs functionality
|
2025-03-25 |
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barcoder
|
public |
Demultiplexing of Sequencing Reads
|
2025-03-25 |
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aplanat
|
public |
Bokeh plotting API, with bio-focussed extras.
|
2025-03-25 |
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fastcat
|
public |
Concatenate fast/a/q/gz and calculate basic statistics
|
2025-03-25 |
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nextclade-cli
|
public |
Clade assignment, mutation calling, and sequence quality checks
|
2025-03-25 |
|
np-artic
|
public |
ARTIC pipeline - which modifications from Oxford Nanopore Technologies
|
2025-03-25 |
