| Package Name | Access | Summary | Updated |
|---|---|---|---|
| mbtools | public | mbtools - toolkit for working with modification BAM files | 2025-03-25 |
| libsass | public | A straightforward binding of libsass for Python. Compile Sass/SCSS in Python with no Ruby stack at all! | 2025-03-25 |
| seqkit | public | a cross-platform and ultrafast toolkit for FASTA/Q file manipulation | 2025-03-25 |
| pysam | public | Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix. | 2025-03-25 |
| flye | public | Fast and accurate de novo assembler for single molecule sequencing reads | 2025-03-25 |
| minimap2 | public | A versatile pairwise aligner for genomic and spliced nucleotide sequences. | 2025-03-25 |
| k8 | public | Lightweight JavaScript shell based on Google's V8 JavaScript engine | 2025-03-25 |
| samtools | public | Tools for dealing with SAM, BAM and CRAM files | 2025-03-25 |
| htslib | public | C library for high-throughput sequencing data formats. | 2025-03-25 |
| pore-c-py | public | Python scripts for working with Pore-C data | 2025-03-25 |
| ezcharts | public | eCharts plotting API | 2025-03-25 |
| kraken2-server | public | Server implementation of kraken2 | 2025-03-25 |
| pychopper | public | A tool to identify, orient and rescue full length cDNA reads from nanopore data. | 2025-03-25 |
| sigfig | public | Python library for rounding numbers (with expected results) | 2025-03-25 |
| modbam2bed | public | Summarise BAM files containing modified-base information to bedMethyl format. | 2025-03-25 |
| plannotate | public | Webserver and command line tool for annotating engineered plasmids | 2025-03-25 |
| epi2melabs | public | Helper library for miscellaneous EPI2ME Labs functionality | 2025-03-25 |
| barcoder | public | Demultiplexing of Sequencing Reads | 2025-03-25 |
| aplanat | public | Bokeh plotting API, with bio-focussed extras. | 2025-03-25 |
| fastcat | public | Concatenate fast/a/q/gz and calculate basic statistics | 2025-03-25 |
| nextclade-cli | public | Clade assignment, mutation calling, and sequence quality checks | 2025-03-25 |
| np-artic | public | ARTIC pipeline - which modifications from Oxford Nanopore Technologies | 2025-03-25 |
