ebi-gene-expression-group
by ebi-gene-expression-group (Organization)
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Packages
| Name | Latest Version | Summary | Updated | License |
|---|
| atlas-anndata | 0.1.9 | Functions for preparing annData files for experiment inclusion in Single cell Expression Atlas | Mar 25, 2025 | Apache-2.0 |
| atlas-bash-util | 0.2.9 | Generic Bash functions used to build Expression Atlas. | May 2, 2025 | GPL-3 |
| atlas-data-import | 0.0.5 | Scripts for extracting expression- and metadata from SCXA in a programmatic way. | Mar 25, 2025 | MIT |
| atlas-experiment-metadata | 0.1.5 | Metadata handling scripts for Atlas | Mar 25, 2025 | Apache-2.0 |
| atlas-fastq-provider | 0.4.0 | A package to provide FASTQs via download or file system linking | Mar 25, 2025 | GPL-3 |
| atlas-gene-annotation-manipulation | 1.0.1 | Scripts for manipulating gene annotation | Mar 25, 2025 | Apache-2.0 |
| atlas-web-bulk-cli | 37.6.46 | A minimal Spring Boot wrapper to run (bulk) Expression Atlas tasks from the command line. | Mar 27, 2026 | Apache-2.0 |
| atlas-web-sc-cli | 17.4.32 | A minimal Spring Boot wrapper to run Single Cell Expression Atlas tasks from the command line. | Mar 31, 2026 | Apache-2.0 |
| irap-bamutils | 0.0.1 | This is the bam utils library distributed as part of iRAP | Mar 25, 2025 | GPL-3 |
| irap-components | 0.0.1 | A lightweight distribution of iRAP without binaries. Nuno Fonseca's iRAP tool is an integrated RNA-seq anlaysis pipeline. It's based on Make to link workflow steps and has old-style dependency management whereby a monolithic install process installs binaries distributed with the the tool. This package installs a fork of the iRAP code where the distributed binaries have been removed. The idea is that individual parts of the iRAP codebase can be utiled outside of iRAP's Make workflow and using Conda's dependency management. THIS IS AN ALPHA PROJECT AND SHOULD NOT BE RELIED UPON. | Mar 25, 2025 | GPL-3 |
| perl-atlas-modules | 0.1.4 | A package exporting in-house perl functions and classes used in the data production of EMBL-EBI Expression Atlas data. | Mar 25, 2025 | GPL-3 |
| r-atlas-internal | 1.8 | A package exporting functions and classes used in the representation and analysis of EMBL-EBI Expression Atlas data. | Mar 25, 2025 | GPL-3 |