dranew
by dranew
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Packages
| Name | Latest Version | Summary | Updated | License |
|---|
| banyan | 0.1.5 | Highly-optimized search trees (red-black, splay, and sorted-list) with optional augmentation (dynamic order statistics, interval trees, etc.) | Mar 25, 2025 | BSD License |
| bcl2fastq | 2.19.0 | bcl2fastq Conversion Software both demultiplexes data and converts BCL files generated by Illumina sequencing systems to standard FASTQ file formats for downstream analysis. | Mar 25, 2025 | — |
| bicseq2-norm | 0.2.4 | — | Mar 25, 2025 | — |
| bicseq2-seg | 0.7.2 | — | Mar 25, 2025 | — |
| biobambam2 | 2.0.30 | Tools for early stage alignment file processing | Mar 25, 2025 | GPLv3 |
| bioconductor-aneufinder | 1.6.0 | This package implements functions for CNV calling, plotting, export and analysis from whole-genome single cell sequencing data. | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-aneufinderdata | 1.6.0 | This package implements functions for CNV calling, plotting, export and analysis from whole-genome single cell sequencing data. | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-bamsignals | 1.10.0 | This package allows to efficiently obtain count vectors from indexed bam files. It counts the number of reads in given genomic ranges and it computes reads profiles and coverage profiles. It also handles paired-end data. | Mar 25, 2025 | GPL-2 |
| bioconductor-hmmcopy | 1.12.0 | Corrects GC and mappability biases for readcounts (i.e. coverage) in non-overlapping windows of fixed length for single whole genome samples, yielding a rough estimate of copy number for furthur analysis. Designed for rapid correction of high coverage whole genome tumour and normal samples. | Mar 25, 2025 | — |
| bioconductor-hmmcopy-single-cell | 1.32.0 | Corrects GC and mappability biases for readcounts (i.e. coverage) in non-overlapping windows of fixed length for single whole genome samples, yielding a rough estimate of copy number for furthur analysis. Designed for rapid correction of high coverage whole genome tumour and normal samples. | Mar 25, 2025 | — |
| bioconductor-titan | 1.10.0 | Corrects GC and mappability biases for readcounts (i.e. coverage) in non-overlapping windows of fixed length for single whole genome samples, yielding a rough estimate of copy number for furthur analysis. Designed for rapid correction of high coverage whole genome tumour and normal samples. | Mar 25, 2025 | — |
| biowrappers | 0.1.0 | — | Mar 25, 2025 | — |
| blossomv | 2.04 | Python wrapper for the Blossom V algorithm | Mar 25, 2025 | The code above is licensed for research purposes only. Commercial licensing of Blossom V is available through the UCL Business e-licensing website. |
| bnpy | 8019474 | Bayesian nonparametric machine learning for python. | Mar 25, 2025 | — |
| boost_lib | 1.75.0 | Library for boost c++ | Mar 25, 2025 | Boost Software License |
| boost_source | 1.60.0 | Source code only for boost c++ | Mar 25, 2025 | Boost Software License |
| citup | 0.1.2 | Clonality inference in multiple tumor samples using phylogeny | Mar 25, 2025 | — |
| clickclick | 1.2.1 | — | Mar 25, 2025 | — |
| clonehd | 1.17.8 | High-definition reconstruction of clonal composition from next-generation sequencing data | Mar 25, 2025 | GPLv3 |
| connexion | 1.1.1 | — | Mar 25, 2025 | — |
| cplex | 12.5.1 | CPLEX optimization studio | Mar 25, 2025 | IBM |
| defuse | 0.8.2 | Bioinformatics tool for gene fusion discovery using RNA-Seq data | Mar 25, 2025 | — |
| delly | 0.7.3 | Structural variant discovery by integrated paired-end and split-read analysis | Mar 25, 2025 | GPLv3 |
| delly_utils | 0.7.2 | Structural variant discovery by integrated paired-end and split-read analysis | Mar 25, 2025 | GPLv3 |
| destruct | 0.4.18 | Bioinformatics tool for joint prediction of rearrangement breakpoints from single or multiple tumour samples | Mar 25, 2025 | MIT |