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gfold
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public |
CLI tool to help keep track of your Git repositories, written in Rust
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2025-12-28 |
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tabiew
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public |
A lightweight TUI application to view and query tabular data files, such as CSV, TSV, and parquet.
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2025-12-28 |
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filessh
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public |
A fast and convenient TUI file browser for remote servers
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2025-12-26 |
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qsv
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public |
Ultra-fast CSV data-wrangling toolkit
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2025-12-26 |
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dxda
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public |
CLI tool to manage the download of large quantities of files from DNAnexus
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2025-12-13 |
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ssed
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public |
Super sed stream editor
|
2025-12-12 |
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r-knockoff
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public |
The knockoff filter is a general procedure for controlling the false discovery rate::
(FDR) when performing variable selection. For more information, see the website
below and the accompanying paper: Candes et al., "Panning for gold: model-X knockoffs'
for high-dimensional controlled variable selection", J. R. Statist. Soc. B (2018)
80, 3, pp. 551-577.
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2025-12-08 |
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r-rdsdp
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public |
R interface to DSDP semidefinite programming library. The DSDP software is a free
open source implementation of an interior-point method for semidefinite programming.
It provides primal and dual solutions, exploits low-rank structure and sparsity
in the data, and has relatively low memory requirements for an interior-point method.
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2025-12-08 |
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r-mr.mash.alpha
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public |
Provides an implementation of methods for multivariate
multiple regression with adaptive shrinkage priors.
|
2025-12-02 |
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r-pecotmr
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public |
pecotmr implements pair-wise enrichment, colocalization, TWAS and Mendelian Randomization to integrate QTL and GWAS analysis based on a fine-mapped single effects model.
|
2025-12-01 |
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yabai
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public |
A tiling window manager for macOS based on binary space partitioning
|
2025-11-26 |
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r-mr.ash.alpha
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public |
Implements variational empirical Bayes methods for linear
regression. Coordinate-wise optimization algorithms for model fitting
are implemented in C++ for efficient handling of large-scale data
sets.
|
2025-11-13 |
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r-varbvs
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public |
Fast algorithms for fitting Bayesian variable selection models and computing Bayes
factors, in which the outcome (or response variable) is modeled using a linear regression
or a logistic regression. The algorithms are based on the variational approximations
described in "Scalable variational inference for Bayesian variable selection in
regression, and its accuracy in genetic association studies" (P. Carbonetto & M.
Stephens, 2012, <DOI:10.1214/12-BA703>). This software has been applied to large
data sets with over a million variables and thousands of samples.
|
2025-11-08 |
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air
|
public |
R formatter and language server
|
2025-10-10 |
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r-l0learn
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public |
Highly optimized toolkit for approximately solving L0-regularized learning problems (a.k.a. best subset selection). The algorithms are based on coordinate descent and local combinatorial search.
|
2025-10-07 |
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gtex-pipeline-phaser
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public |
GTEx & TOPMed data production and analysis pipelines - phASER wrapper
|
2025-09-23 |
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cadd-scripts-regseq
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public |
No Summary
|
2025-09-19 |
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cadd-scripts-mmsplice
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public |
No Summary
|
2025-09-19 |
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cadd-scripts-esmscore
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public |
No Summary
|
2025-09-19 |
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concise
|
public |
CONCISE (COnvolutional Neural for CIS-regulatory Elements)
|
2025-09-19 |
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r-qgg
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public |
'Provides an infrastructure for efficient processing of large-scale genetic and phenotypic data including core functions for: 1) fitting linear mixed models, 2) constructing marker-based genomic relationship matrices, 3) estimating genetic parameters (heritability and correlation), 4) performing genomic prediction and genetic risk profiling, and 5) single or multi-marker association analyses. Rohde et al. (2019) <doi:10.1101/503631>.'
|
2025-09-06 |
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finemo_gpu
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public |
Fi-NeMo (Finding Neural network Motifs) is a GPU-accelerated hit caller for identifying occurrences of TFMoDISCo motifs.
|
2025-09-05 |
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ueberzugpp
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public |
Command line utility which allows to display images in the terminal, written in C++
|
2025-09-03 |
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r-gsmr2
|
public |
gsmr2 - a tool for causal inference between complex traits
|
2025-09-02 |
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sprint
|
public |
No Summary
|
2025-07-25 |
