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r-wgcna
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public |
Functions necessary to perform Weighted Correlation Network Analysis on high-dimensional
data as originally described in Horvath and Zhang (2005) <doi:10.2202/1544-6115.1128>
and Langfelder and Horvath (2008) <doi:10.1186/1471-2105-9-559>. Includes functions
for rudimentary data cleaning, construction of correlation networks, module identification,
summarization, and relating of variables and modules to sample traits. Also includes
a number of utility functions for data manipulation and visualization.
|
2025-03-25 |
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bioconductor-motifmatchr
|
public |
Fast Motif Matching in R
|
2025-03-25 |
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bioconductor-dropletutils
|
public |
Utilities for Handling Single-Cell Droplet Data
|
2025-03-25 |
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bioconductor-chromvar
|
public |
Chromatin Variation Across Regions
|
2025-03-25 |
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bioconductor-rdisop
|
public |
Decomposition of Isotopic Patterns
|
2025-03-25 |
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bioconductor-hdf5array
|
public |
HDF5 backend for DelayedArray objects
|
2025-03-25 |
|
bioconductor-tfbstools
|
public |
Software Package for Transcription Factor Binding Site (TFBS) Analysis
|
2025-03-25 |
|
bioconductor-rhdf5
|
public |
R Interface to HDF5
|
2025-03-25 |
|
bioconductor-cner
|
public |
CNE Detection and Visualization
|
2025-03-25 |
|
bioconductor-rhdf5filters
|
public |
HDF5 Compression Filters
|
2025-03-25 |
|
bioconductor-rtracklayer
|
public |
R interface to genome annotation files and the UCSC genome browser
|
2025-03-25 |
|
r-restfulr
|
public |
Models a RESTful service as if it were a nested R list.
|
2025-03-25 |
|
bioconductor-genomicalignments
|
public |
Representation and manipulation of short genomic alignments
|
2025-03-25 |
|
bioconductor-bluster
|
public |
Clustering Algorithms for Bioconductor
|
2025-03-25 |
|
bioconductor-deseq2
|
public |
Differential gene expression analysis based on the negative binomial distribution
|
2025-03-25 |
|
bioconductor-scuttle
|
public |
Single-Cell RNA-Seq Analysis Utilities
|
2025-03-25 |
|
bioconductor-rsamtools
|
public |
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
|
2025-03-25 |
|
bioconductor-biocneighbors
|
public |
Nearest Neighbor Detection for Bioconductor Packages
|
2025-03-25 |
|
bioconductor-beachmat
|
public |
Compiling Bioconductor to Handle Each Matrix Type
|
2025-03-25 |
|
bioconductor-metapod
|
public |
Meta-Analyses on P-Values of Differential Analyses
|
2025-03-25 |
|
bioconductor-sparsematrixstats
|
public |
Summary Statistics for Rows and Columns of Sparse Matrices
|
2025-03-25 |
|
bioconductor-multtest
|
public |
Resampling-based multiple hypothesis testing
|
2025-03-25 |
|
bioconductor-rhtslib
|
public |
HTSlib high-throughput sequencing library as an R package
|
2025-03-25 |
|
bioconductor-snpstats
|
public |
SnpMatrix and XSnpMatrix classes and methods
|
2025-03-25 |
|
bioconductor-illuminaio
|
public |
Parsing Illumina Microarray Output Files
|
2025-03-25 |
