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r-viper
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public |
The package implements a straightforward, accurate, free-of-tuning, and relatively computationally efficient scRNAseq imputation method.
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2025-03-25 |
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r-metro
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public |
Multi-ancEstry TRanscriptOme-wide analysis
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2025-03-25 |
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r-mesusie
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public |
Multi-ancestry Sum of the Single Effects Model
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2025-03-25 |
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r-image
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public |
MQTL mapping in bisulfite sequencing studies by fitting a binomial mixed model, incorporating allelic-specific methylation pattern.
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2025-03-25 |
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r-idea
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public |
iDEA is a new method for analyzing single-cell RNAseq data.
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2025-03-25 |
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r-gift
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public |
GIFT is an R package for efficient statistical inference of conditional TWAS fine-mapping.
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2025-03-25 |
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r-gecko
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public |
Genetic and Environmental Covariance Estimation by Composite-Likelihood Optimization
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2025-03-25 |
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r-ecco
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public |
ECCO is implemented as an open source R package for determining the optimal number of PEER factors in eQTL mapping studies.
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2025-03-25 |
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r-coconet
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public |
Composite likelihood-based Covariance regression Network model for identification of trait-relevant tissues or cell types.
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2025-03-25 |
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mtpgs
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public |
mtPGS is a statistical method that leverages multiple traits to construct accurate polygenic scores (PGS) for a target trait of interest.
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2025-03-25 |
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macau
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public |
MACAU is the software implementing the Mixed model Association for Count data via data AUgmentation algorithm.
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2025-03-25 |
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r-sda4d
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public |
R package SDA4D for performing 4-dimensional sparse Bayesian tensor decomposition
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2025-03-25 |
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duohmm
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public |
A post-hoc pedigree phasing routine for use with SHAPEIT2
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2025-03-25 |
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lemma
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public |
LEMMA (Linear Environment Mixed Model Analysis) aims to uncover GxE interactions between SNPs and a linear combination of multiple environmental variables.
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2025-03-25 |
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qctool
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public |
Command-line programs that manipulate gwas datasets and other genomic data.
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2025-03-25 |
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phaser
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public |
phasing and Allele Specific Expression from RNA-seq
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2025-03-25 |
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wasp
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public |
WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery
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2025-03-25 |
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swing
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public |
No Summary
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2025-03-25 |
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sushie
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public |
Software to perform multi-ancestry fine-mapping and estimate prediction weights for molQTL data
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2025-03-25 |
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bgen-reader
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public |
Bgen file format reader
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2025-03-25 |
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python_circos
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public |
Circos plots for python
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2025-03-25 |
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ktplotspy
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public |
Python library for plotting Cellphonedb results. Ported from ktplots R package.
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2025-03-25 |
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geosketch
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public |
Geometry-preserving random sampling
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2025-03-25 |
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cellphonedb
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public |
No Summary
|
2025-03-25 |
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r-mr.cue
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public |
MR.CUE is a package for Mendelian randomization informs shared genetic etiology underlying exposure and outcome by interrogating correlated horizontal pleiotropy.
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2025-03-25 |
