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r-susier
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public |
Implements methods for variable selection in linear regression based on the "Sum of Single Effects" (SuSiE) model, as described in Wang et al (2020) <DOI:10.1101/501114>. These methods provide simple summaries, called "Credible Sets", for accurately quantifying uncertainty in which variables should be selected. The methods are motivated by genetic fine-mapping applications, and are particularly well-suited to settings where variables are highly correlated and detectable effects are sparse. The fitting algorithm, a Bayesian analogue of stepwise selection methods called "Iterative Bayesian Stepwise Selection" (IBSS), is simple and fast, allowing the SuSiE model be fit to large data sets (thousands of samples and hundreds of thousands of variables).
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2025-03-25 |
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ddqc
|
public |
No Summary
|
2025-03-25 |
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cellbender
|
public |
A software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data
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2025-03-25 |
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r-mbsp
|
public |
Gibbs sampler for fitting multivariate Bayesian linear regression with shrinkage priors (MBSP), using the three parameter beta normal family. The method is described in Bai and Ghosh (2018) <doi:10.1016/j.jmva.2018.04.010>.
|
2025-03-25 |
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r-mr.mash.alpha
|
public |
Provides an implementation of methods for multivariate
multiple regression with adaptive shrinkage priors.
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2025-03-25 |
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perl-switch
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public |
A switch statement for Perl, do not use if you can use given/when
|
2025-03-25 |
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gregor
|
public |
GREGOR (Genomic Regulatory Elements and Gwas Overlap algoRithm) is a tool to test for enrichment of an input list of trait-associated index SNPs in experimentally annotated regulatory domains.
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2025-03-25 |
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erg
|
public |
Statically typed language that can deeply improve the Python ecosystem
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2025-03-25 |
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rb-method_source
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public |
retrieve the sourcecode for a method
|
2025-03-25 |
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rb-coderay
|
public |
Fast and easy syntax highlighting for selected languages, written in Ruby. Comes with RedCloth integration and LOC counter.
|
2025-03-25 |
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pry
|
public |
Pry is a runtime developer console and IRB alternative with powerful introspection capabilities.
|
2025-03-25 |
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perl-syntax-highlight-perl-improved
|
public |
Highlighting of Perl Syntactical Structures
|
2025-03-25 |
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perl-rlib
|
public |
manipulate @INC at compile time with relative paths
|
2025-03-25 |
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perl-lwp-mediatypes
|
public |
guess media type for a file or a URL
|
2025-03-25 |
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perl-io-html
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public |
Open an HTML file with automatic charset detection
|
2025-03-25 |
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perl-http-message
|
public |
HTTP style message (base class)
|
2025-03-25 |
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perl-http-date
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public |
HTTP::Date - date conversion routines
|
2025-03-25 |
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perl-html-tagset
|
public |
data tables useful in parsing HTML
|
2025-03-25 |
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perl-encode-locale
|
public |
Determine the locale encoding
|
2025-03-25 |
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perl-devel-trepan
|
public |
Modular Perl Debugger (akin to Python "Trepanning" Debuggers).
|
2025-03-25 |
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perl-config-autoconf
|
public |
A module to implement some of AutoConf macros in pure perl.
|
2025-03-25 |
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perl-array-columnize
|
public |
Format an Array as an Array of String aligned in columns.
|
2025-03-25 |
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perl-marpa-r2
|
public |
Release 2 of Marpa
|
2025-03-25 |
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perl-html-parser
|
public |
HTML parser class
|
2025-03-25 |
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perl-devel-callsite
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public |
Get caller return OP address and Perl interpreter context
|
2025-03-25 |
