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perl-file-pushd
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public |
change directory temporarily for a limited scope
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2025-03-25 |
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r-rstanarm
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public |
Estimates previously compiled regression models using the 'rstan' package, which provides the R interface to the Stan C++ library for Bayesian estimation. Users specify models via the customary R syntax with a formula and data.frame plus some additional arguments for priors.
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2025-03-25 |
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r-stanheaders
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public |
The C++ header files of the Stan project are provided by this package, but it contains little R code or documentation. The main reference is the vignette. There is a shared object containing part of the 'CVODES' library, but its functionality is not accessible from R. 'StanHeaders' is only useful for developers who want to utilize the 'LinkingTo' directive of their package's DESCRIPTION file to build on the Stan library without incurring unnecessary dependencies. The Stan project develops a probabilistic programming language that implements full or approximate Bayesian statistical inference via Markov Chain Monte Carlo or 'variational' methods and implements (optionally penalized) maximum likelihood estimation via optimization. The Stan library includes an advanced automatic differentiation scheme, 'templated' statistical and linear algebra functions that can handle the automatically 'differentiable' scalar types (and doubles, 'ints', etc.), and a parser for the Stan language. The 'rstan' package provides user-facing R functions to parse, compile, test, estimate, and analyze Stan models.
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2025-03-25 |
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seqlib
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public |
C++ htslib/bwa-mem/fermi interface for interrogating sequence data
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2025-03-25 |
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fermi-lite_seqlib
|
public |
Standalone C library for assembling Illumina short reads in small regions (SeqLib fork)
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2025-03-25 |
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bwa_seqlib
|
public |
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences (fork for SeqLib)
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2025-03-25 |
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perl-io-tty
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public |
Pseudo ttys and constants
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2025-03-25 |
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perl-file-remove
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public |
Remove files and directories
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2025-03-25 |
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rfmix
|
public |
Local Ancestry and Admixture Inference Version 2
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2025-03-25 |
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the_silver_searcher
|
public |
A code searching tool similar to ack, with a focus on speed.
|
2025-03-25 |
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gcta_nr_robust
|
public |
Robust version of GCTA for heritability estimation in FUSION
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2025-03-25 |
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plink
|
public |
Whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner.
|
2025-03-25 |
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shrinkwrap
|
public |
A std::streambuf wrapper for compression formats.
|
2025-03-25 |
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bioconductor-scran
|
public |
Methods for Single-Cell RNA-Seq Data Analysis
|
2025-03-25 |
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bioconductor-batchelor
|
public |
Single-Cell Batch Correction Methods
|
2025-03-25 |
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bioconductor-biocsingular
|
public |
Singular Value Decomposition for Bioconductor Packages
|
2025-03-25 |
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perl-xml-libxml
|
public |
Interface to Gnome libxml2 xml parsing and DOM library
|
2025-03-25 |
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perl-alien-libxml2
|
public |
Install the C libxml2 library on your system
|
2025-03-25 |
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perl-dbi
|
public |
Database independent interface for Perl
|
2025-03-25 |
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perl-db_file
|
public |
DB_File is a module which allows Perl programs to make use of the facilities provided by Berkeley DB
|
2025-03-25 |
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perl-cgi
|
public |
A generic file fetching mechanism
|
2025-03-25 |
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perl-alien-build
|
public |
Build external dependencies for use in CPAN
|
2025-03-25 |
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perl-xml-parser
|
public |
A perl module for parsing XML documents
|
2025-03-25 |
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perl-math-cdf
|
public |
Generate probabilities and quantiles from several statistical probability functions
|
2025-03-25 |
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perl-unix-processors
|
public |
Interface to processor (CPU) information
|
2025-03-25 |
