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perl-sub-quote
|
public |
Efficient generation of subroutines via string eval
|
2025-03-25 |
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perl-moose
|
public |
A postmodern object system for Perl 5
|
2025-03-25 |
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perl-data-optlist
|
public |
parse and validate simple name/value option pairs
|
2025-03-25 |
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perl-devel-globaldestruction
|
public |
Provides function returning the equivalent of ${^GLOBAL_PHASE} eq 'DESTRUCT' for older perls.
|
2025-03-25 |
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perl-mro-compat
|
public |
mro::* interface compatibility for Perls < 5.9.5
|
2025-03-25 |
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perl-class-load-xs
|
public |
XS implementation of parts of Class::Load
|
2025-03-25 |
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perl-sub-name
|
public |
(Re)name a sub
|
2025-03-25 |
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perl-role-tiny
|
public |
Roles: a nouvelle cuisine portion size slice of Moose
|
2025-03-25 |
|
perl-module-implementation
|
public |
Loads one of several alternate underlying implementations for a module
|
2025-03-25 |
|
perl-module-build
|
public |
Build and install Perl modules
|
2025-03-25 |
|
perl-moo
|
public |
Minimalist Object Orientation (with Moose compatibility)
|
2025-03-25 |
|
perl-sub-exporter
|
public |
a sophisticated exporter for custom-built routines
|
2025-03-25 |
|
perl-inc-latest
|
public |
use modules bundled in inc/ if they are newer than installed ones
|
2025-03-25 |
|
perl-class-data-inheritable
|
public |
Inheritable, overridable class data
|
2025-03-25 |
|
perl-try-tiny
|
public |
Minimal try/catch with proper preservation of $@
|
2025-03-25 |
|
perl-test-warnings
|
public |
Test for warnings and the lack of them
|
2025-03-25 |
|
perl-test-differences
|
public |
Test strings and data structures and show differences if not ok
|
2025-03-25 |
|
perl-class-method-modifiers
|
public |
Provides Moose-like method modifiers
|
2025-03-25 |
|
perl-devel-stacktrace
|
public |
An object representing a stack trace
|
2025-03-25 |
|
perl-module-runtime
|
public |
runtime module handling
|
2025-03-25 |
|
perl-readonly
|
public |
Facility for creating read-only scalars, arrays, hashes
|
2025-03-25 |
|
perl-uri
|
public |
Uniform Resource Identifiers (absolute and relative)
|
2025-03-25 |
|
perl-file-pushd
|
public |
change directory temporarily for a limited scope
|
2025-03-25 |
|
r-rstanarm
|
public |
Estimates previously compiled regression models using the 'rstan' package, which provides the R interface to the Stan C++ library for Bayesian estimation. Users specify models via the customary R syntax with a formula and data.frame plus some additional arguments for priors.
|
2025-03-25 |
|
r-stanheaders
|
public |
The C++ header files of the Stan project are provided by this package, but it contains little R code or documentation. The main reference is the vignette. There is a shared object containing part of the 'CVODES' library, but its functionality is not accessible from R. 'StanHeaders' is only useful for developers who want to utilize the 'LinkingTo' directive of their package's DESCRIPTION file to build on the Stan library without incurring unnecessary dependencies. The Stan project develops a probabilistic programming language that implements full or approximate Bayesian statistical inference via Markov Chain Monte Carlo or 'variational' methods and implements (optionally penalized) maximum likelihood estimation via optimization. The Stan library includes an advanced automatic differentiation scheme, 'templated' statistical and linear algebra functions that can handle the automatically 'differentiable' scalar types (and doubles, 'ints', etc.), and a parser for the Stan language. The 'rstan' package provides user-facing R functions to parse, compile, test, estimate, and analyze Stan models.
|
2025-03-25 |
|
seqlib
|
public |
C++ htslib/bwa-mem/fermi interface for interrogating sequence data
|
2025-03-25 |
|
fermi-lite_seqlib
|
public |
Standalone C library for assembling Illumina short reads in small regions (SeqLib fork)
|
2025-03-25 |
|
bwa_seqlib
|
public |
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences (fork for SeqLib)
|
2025-03-25 |
|
perl-io-tty
|
public |
Pseudo ttys and constants
|
2025-03-25 |
|
perl-file-remove
|
public |
Remove files and directories
|
2025-03-25 |
|
rfmix
|
public |
Local Ancestry and Admixture Inference Version 2
|
2025-03-25 |
|
the_silver_searcher
|
public |
A code searching tool similar to ack, with a focus on speed.
|
2025-03-25 |
|
gcta_nr_robust
|
public |
Robust version of GCTA for heritability estimation in FUSION
|
2025-03-25 |
|
plink
|
public |
Whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner.
|
2025-03-25 |
|
shrinkwrap
|
public |
A std::streambuf wrapper for compression formats.
|
2025-03-25 |
|
bioconductor-scran
|
public |
Methods for Single-Cell RNA-Seq Data Analysis
|
2025-03-25 |
|
bioconductor-batchelor
|
public |
Single-Cell Batch Correction Methods
|
2025-03-25 |
|
bioconductor-biocsingular
|
public |
Singular Value Decomposition for Bioconductor Packages
|
2025-03-25 |
|
perl-xml-libxml
|
public |
Interface to Gnome libxml2 xml parsing and DOM library
|
2025-03-25 |
|
perl-alien-libxml2
|
public |
Install the C libxml2 library on your system
|
2025-03-25 |
|
perl-dbi
|
public |
Database independent interface for Perl
|
2025-03-25 |
|
perl-db_file
|
public |
DB_File is a module which allows Perl programs to make use of the facilities provided by Berkeley DB
|
2025-03-25 |
|
perl-cgi
|
public |
A generic file fetching mechanism
|
2025-03-25 |
|
perl-alien-build
|
public |
Build external dependencies for use in CPAN
|
2025-03-25 |
|
perl-xml-parser
|
public |
A perl module for parsing XML documents
|
2025-03-25 |
|
perl-math-cdf
|
public |
Generate probabilities and quantiles from several statistical probability functions
|
2025-03-25 |
|
perl-unix-processors
|
public |
Interface to processor (CPU) information
|
2025-03-25 |
|
r-fdrtool
|
public |
Estimates both tail area-based false discovery rates (Fdr) as well as local false discovery rates (fdr) for a variety of null models (p-values, z-scores, correlation coefficients, t-scores). The proportion of null values and the parameters of the null distribution are adaptively estimated from the data. In addition, the package contains functions for non-parametric density estimation (Grenander estimator), for monotone regression (isotonic regression and antitonic regression with weights), for computing the greatest convex minorant (GCM) and the least concave majorant (LCM), for the half-normal and correlation distributions, and for computing empirical higher criticism (HC) scores and the corresponding decision threshold.
|
2025-03-25 |
|
r-wgcna
|
public |
Functions necessary to perform Weighted Correlation Network Analysis on high-dimensional
data as originally described in Horvath and Zhang (2005) <doi:10.2202/1544-6115.1128>
and Langfelder and Horvath (2008) <doi:10.1186/1471-2105-9-559>. Includes functions
for rudimentary data cleaning, construction of correlation networks, module identification,
summarization, and relating of variables and modules to sample traits. Also includes
a number of utility functions for data manipulation and visualization.
|
2025-03-25 |
|
bioconductor-motifmatchr
|
public |
Fast Motif Matching in R
|
2025-03-25 |
