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bioconductor-genesis
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public |
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness
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2025-04-08 |
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bioconductor-seqarray
|
public |
Data Management of Large-Scale Whole-Genome Sequence Variant Calls
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2025-04-08 |
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bioconductor-snprelate
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public |
Parallel Computing Toolset for Relatedness and Principal Component Analysis of SNP Data
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2025-04-08 |
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bioconductor-gdsfmt
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public |
R Interface to CoreArray Genomic Data Structure (GDS) Files
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2025-04-08 |
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bioconductor-cytolib
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public |
C++ infrastructure for representing and interacting with the gated cytometry data
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2025-04-08 |
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quantas
|
public |
Tools for inference of gene transcript structure and quantification of gene expression and alternate splicing
|
2025-04-08 |
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torch-spline-conv-gpu
|
public |
Implementation of the Spline-Based Convolution Operator of SplineCNN in PyTorch
|
2025-04-04 |
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torch-spline-conv
|
public |
Implementation of the Spline-Based Convolution Operator of SplineCNN in PyTorch
|
2025-04-04 |
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torch-sparse-gpu
|
public |
PyTorch Extension Library of Optimized Autograd Sparse Matrix Operations
|
2025-04-04 |
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torch-scatter-gpu
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public |
PyTorch Extension Library of Optimized Scatter Operations
|
2025-04-04 |
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torch-cluster-gpu
|
public |
PyTorch Extension Library of Optimized Graph Cluster Algorithms
|
2025-04-03 |
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r-minque
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public |
'This package offers three important components: (1) to construct a use-defined linear::
mixed model, (2) to employ one of linear mixed model approaches: minimum norm quadratic
- unbiased estimation (MINQUE) (Rao, 1971) for variance component estimation and random
- effect prediction; and (3) to employ a jackknife resampling technique to conduct
- various statistical tests. In addition, this package provides the function for model
- or data evaluations.This R package offers fast computations for large data sets
- "analyses for various irregular data structures.'"
|
2025-04-03 |
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r-fsusier
|
public |
Draft package for "Sum of Single Functions" method.
|
2025-04-03 |
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r-smashr
|
public |
An R package for smoothing & signal denoising using adaptive shrinkage.
|
2025-04-03 |
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torch-sparse
|
public |
PyTorch Extension Library of Optimized Autograd Sparse Matrix Operations
|
2025-04-03 |
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pegasusio
|
public |
PegasusIO is the IO package for Pegasus.
|
2025-04-03 |
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pegasuspy
|
public |
An efficient Python analysis tool which scales to transcriptomes of millions of single cells.
|
2025-04-03 |
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torch-scatter
|
public |
PyTorch Extension Library of Optimized Scatter Operations
|
2025-04-03 |
|
torch-cluster
|
public |
PyTorch Extension Library of Optimized Graph Cluster Algorithms
|
2025-04-03 |
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poppler-utils
|
public |
Precompiled command-line utilities (based on Poppler) for manipulating PDF files and converting them to other formats.
|
2025-04-03 |
|
torchviz
|
public |
A small package to create visualizations of PyTorch execution graphs
|
2025-04-03 |
|
pywfa
|
public |
A python wrapper for wavefront alignment using WFA2-lib
|
2025-03-28 |
|
watershed-sv
|
public |
Watershed-SV extends Watershed to model the impact of rare SVs
|
2025-03-26 |
|
r-pecotmr
|
public |
pecotmr implements pair-wise enrichment, colocalization, TWAS and Mendelian Randomization to integrate QTL and GWAS analysis based on a fine-mapped single effects model.
|
2025-03-26 |
|
scikit-misc
|
public |
Miscellaneous tools for scientific computing.
|
2025-03-25 |
|
pyfit-sne
|
public |
Python wrapper for FFT-accelerated Interpolation-based t-SNE (FIt-SNE) package.
|
2025-03-25 |
|
r-plinkqc
|
public |
Genotyping arrays enable the direct measurement of an individuals genotype at thousands
of markers. 'plinkQC' facilitates genotype quality control for genetic association
studies as described by Anderson and colleagues (2010) <doi:10.1038/nprot.2010.116>.
It makes 'PLINK' basic statistics (e.g. missing genotyping rates per individual,
allele frequencies per genetic marker) and relationship functions accessible from
'R' and generates a per-individual and per-marker quality control report. Individuals
and markers that fail the quality control can subsequently be removed to generate
a new, clean dataset. Removal of individuals based on relationship status is optimised
to retain as many individuals as possible in the study.
|
2025-03-25 |
|
quantas_cu
|
public |
Tools for inference of gene transcript structure and quantification of gene expression and alternate splicing
|
2025-03-25 |
|
onepassword-cli
|
public |
CLI for 1Password password manager
|
2025-03-25 |
|
keepassxc
|
public |
KeePassXC is a cross-platform community-driven port of the Windows application “Keepass Password Safe”.
|
2025-03-25 |
|
botan
|
public |
Crypto library written in C++
|
2025-03-25 |
|
argon
|
public |
The password hash Argon2, winner of PHC
|
2025-03-25 |
|
password-store
|
public |
Stores, retrieves, generates, and synchronizes passwords securely
|
2025-03-25 |
|
dashlane-cli
|
public |
Dashlane CLI - Access your secrets in your terminal, servers and CI/CD
|
2025-03-25 |
|
bitwarden-cli
|
public |
A secure and free password manager for all of your devices.
|
2025-03-25 |
|
keepercommander
|
public |
Keeper Commander for Python 3
|
2025-03-25 |
|
aiortc
|
public |
An implementation of WebRTC and ORTC
|
2025-03-25 |
|
pylibsrtp
|
public |
Python wrapper around the libsrtp library
|
2025-03-25 |
|
libsrtp
|
public |
Library for SRTP (Secure Realtime Transport Protocol)
|
2025-03-25 |
|
splicetransformer
|
public |
SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence
|
2025-03-25 |
|
splicebert
|
public |
Primary RNA sequence model
|
2025-03-25 |
|
absplice
|
public |
Invoke py.test as distutils command with dependency resolution
|
2025-03-25 |
|
cyvcf2
|
public |
A cython wrapper around htslib built for fast parsing of Variant Call Format (VCF) files
|
2025-03-25 |
|
splicemap
|
public |
Invoke py.test as distutils command with dependency resolution
|
2025-03-25 |
|
fastbetabino3
|
public |
Superfast betabinomial fit implemented in Cython
|
2025-03-25 |
|
r-blipr
|
public |
A Bayesian Linear Program for resolution-adaptive signal detection
|
2025-03-25 |
|
r-rcbc
|
public |
An R interface to the CBC solver for mixed-integer linear programs.
|
2025-03-25 |
|
r-scalespikeslab
|
public |
A scalable Gibbs sampling implementation for high dimensional Bayesian regression
with the continuous spike-and-slab prior. Niloy Biswas, Lester Mackey and Xiao-Li
Meng, "Scalable Spike-and-Slab" (2022) <arXiv:2204.01668>.
|
2025-03-25 |
|
r-truncatednormal
|
public |
A collection of functions to deal with the truncated univariate and multivariate normal
and Student distributions, described in Botev (2017) <doi:10.1111/rssb.12162> and
Botev and L'Ecuyer (2015) <doi:10.1109/WSC.2015.7408180>.
|
2025-03-25 |
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r-qrng
|
public |
Functionality for generating (randomized) quasi-random numbers in high dimensions.
|
2025-03-25 |
