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nemo-toolkit
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public |
NeMo - a toolkit for Conversational AI
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2025-04-22 |
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pywfa
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public |
A python wrapper for wavefront alignment using WFA2-lib
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2025-04-22 |
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yabai
|
public |
A tiling window manager for macOS based on binary space partitioning
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2025-04-22 |
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watershed-sv
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public |
Watershed-SV extends Watershed to model the impact of rare SVs
|
2025-04-17 |
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r-mr.ash.alpha
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public |
Implements variational empirical Bayes methods for linear
regression. Coordinate-wise optimization algorithms for model fitting
are implemented in C++ for efficient handling of large-scale data
sets.
|
2025-04-17 |
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r-pecotmr
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public |
pecotmr implements pair-wise enrichment, colocalization, TWAS and Mendelian Randomization to integrate QTL and GWAS analysis based on a fine-mapped single effects model.
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2025-04-14 |
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r-gmmat
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public |
Perform association tests using generalized linear mixed models (GLMMs) in genome-wide association studies (GWAS) and sequencing association studies. First, GMMAT fits a GLMM with covariate adjustment and random effects to account for population structure and familial or cryptic relatedness. For GWAS, GMMAT performs score tests for each genetic variant as proposed in Chen et al. (2016) <doi:10.1016/j.ajhg.2016.02.012>. For candidate gene studies, GMMAT can also perform Wald tests to get the effect size estimate for each genetic variant. For rare variant analysis from sequencing association studies, GMMAT performs the variant Set Mixed Model Association Tests (SMMAT) as proposed in Chen et al. (2019) <doi:10.1016/j.ajhg.2018.12.012>, including the burden test, the sequence kernel association test (SKAT), SKAT-O and an efficient hybrid test of the burden test and SKAT, based on user-defined variant sets.
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2025-04-08 |
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bioconductor-seqarray
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public |
Data Management of Large-Scale Whole-Genome Sequence Variant Calls
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2025-04-08 |
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bioconductor-gdsfmt
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public |
R Interface to CoreArray Genomic Data Structure (GDS) Files
|
2025-04-08 |
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bioconductor-cytolib
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public |
C++ infrastructure for representing and interacting with the gated cytometry data
|
2025-04-08 |
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quantas
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public |
Tools for inference of gene transcript structure and quantification of gene expression and alternate splicing
|
2025-04-08 |
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r-fsusier
|
public |
Draft package for "Sum of Single Functions" method.
|
2025-04-03 |
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pegasusio
|
public |
PegasusIO is the IO package for Pegasus.
|
2025-04-03 |
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pegasuspy
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public |
An efficient Python analysis tool which scales to transcriptomes of millions of single cells.
|
2025-04-03 |
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scikit-misc
|
public |
Miscellaneous tools for scientific computing.
|
2025-03-25 |
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pyfit-sne
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public |
Python wrapper for FFT-accelerated Interpolation-based t-SNE (FIt-SNE) package.
|
2025-03-25 |
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r-plinkqc
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public |
Genotyping arrays enable the direct measurement of an individuals genotype at thousands
of markers. 'plinkQC' facilitates genotype quality control for genetic association
studies as described by Anderson and colleagues (2010) <doi:10.1038/nprot.2010.116>.
It makes 'PLINK' basic statistics (e.g. missing genotyping rates per individual,
allele frequencies per genetic marker) and relationship functions accessible from
'R' and generates a per-individual and per-marker quality control report. Individuals
and markers that fail the quality control can subsequently be removed to generate
a new, clean dataset. Removal of individuals based on relationship status is optimised
to retain as many individuals as possible in the study.
|
2025-03-25 |
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quantas_cu
|
public |
Tools for inference of gene transcript structure and quantification of gene expression and alternate splicing
|
2025-03-25 |
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onepassword-cli
|
public |
CLI for 1Password password manager
|
2025-03-25 |
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keepassxc
|
public |
KeePassXC is a cross-platform community-driven port of the Windows application “Keepass Password Safe”.
|
2025-03-25 |
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botan
|
public |
Crypto library written in C++
|
2025-03-25 |
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argon
|
public |
The password hash Argon2, winner of PHC
|
2025-03-25 |
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password-store
|
public |
Stores, retrieves, generates, and synchronizes passwords securely
|
2025-03-25 |
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dashlane-cli
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public |
Dashlane CLI - Access your secrets in your terminal, servers and CI/CD
|
2025-03-25 |
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bitwarden-cli
|
public |
A secure and free password manager for all of your devices.
|
2025-03-25 |
