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r-image
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public |
MQTL mapping in bisulfite sequencing studies by fitting a binomial mixed model, incorporating allelic-specific methylation pattern.
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2025-03-25 |
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r-idea
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public |
iDEA is a new method for analyzing single-cell RNAseq data.
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2025-03-25 |
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r-gift
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public |
GIFT is an R package for efficient statistical inference of conditional TWAS fine-mapping.
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2025-03-25 |
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r-gecko
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public |
Genetic and Environmental Covariance Estimation by Composite-Likelihood Optimization
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2025-03-25 |
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r-ecco
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public |
ECCO is implemented as an open source R package for determining the optimal number of PEER factors in eQTL mapping studies.
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2025-03-25 |
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r-coconet
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public |
Composite likelihood-based Covariance regression Network model for identification of trait-relevant tissues or cell types.
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2025-03-25 |
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mtpgs
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public |
mtPGS is a statistical method that leverages multiple traits to construct accurate polygenic scores (PGS) for a target trait of interest.
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2025-03-25 |
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macau
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public |
MACAU is the software implementing the Mixed model Association for Count data via data AUgmentation algorithm.
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2025-03-25 |
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r-sda4d
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public |
R package SDA4D for performing 4-dimensional sparse Bayesian tensor decomposition
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2025-03-25 |
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duohmm
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public |
A post-hoc pedigree phasing routine for use with SHAPEIT2
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2025-03-25 |
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lemma
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public |
LEMMA (Linear Environment Mixed Model Analysis) aims to uncover GxE interactions between SNPs and a linear combination of multiple environmental variables.
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2025-03-25 |
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qctool
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public |
Command-line programs that manipulate gwas datasets and other genomic data.
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2025-03-25 |
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phaser
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public |
phasing and Allele Specific Expression from RNA-seq
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2025-03-25 |
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wasp
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public |
WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery
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2025-03-25 |
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swing
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public |
No Summary
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2025-03-25 |
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sushie
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public |
Software to perform multi-ancestry fine-mapping and estimate prediction weights for molQTL data
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2025-03-25 |
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bgen-reader
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public |
Bgen file format reader
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2025-03-25 |
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python_circos
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public |
Circos plots for python
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2025-03-25 |
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ktplotspy
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public |
Python library for plotting Cellphonedb results. Ported from ktplots R package.
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2025-03-25 |
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geosketch
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public |
Geometry-preserving random sampling
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2025-03-25 |
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cellphonedb
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public |
No Summary
|
2025-03-25 |
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r-mr.cue
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public |
MR.CUE is a package for Mendelian randomization informs shared genetic etiology underlying exposure and outcome by interrogating correlated horizontal pleiotropy.
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2025-03-25 |
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r-mr.corr2
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public |
MR.Corr2 is a package for two-sample Mendelian randomization using correlated instrumental variants accounting correlated horizontal pleiotropy.
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2025-03-25 |
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r-maxprobes
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public |
Maxprobes package collects cross-reactive probes of Illumina methylation array 450K and EPIC/850K.
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2025-03-25 |
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r-mblm
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public |
Provides linear models based on Theil-Sen single median and Siegel repeated medians. They are very robust (29 or 50 percent breakdown point, respectively), and if no outliers are present, the estimators are very similar to OLS.
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2025-03-25 |
