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fastlmmc
|
public |
Factored Spectrally Transformed Linear Mixed Model
|
2025-03-25 |
|
bgen-py
|
public |
Package for loading data from bgen files
|
2025-03-25 |
|
fastlmm
|
public |
Fast GWAS
|
2025-03-25 |
|
pysnptools
|
public |
PySnpTools
|
2025-03-25 |
|
fastlmmclib
|
public |
Fast GWAS
|
2025-03-25 |
|
elapsed
|
public |
Elapsed time C library.
|
2025-03-25 |
|
cbgen
|
public |
Python wrapper around a BGEN library
|
2025-03-25 |
|
r-hudson
|
public |
This package creates mirrored Manhattan (Hudson) plots for *ome-wide association analyses, including, but not limited to, GWAS, PheWAS, and EWAS.
|
2025-03-25 |
|
bwa-mem2
|
public |
The next version of bwa-mem
|
2025-03-25 |
|
r-stylo
|
public |
Supervised and unsupervised multivariate methods, supplemented by GUI and some visualizations, to perform various analyses in the field of computational stylistics, authorship attribution, etc. For further reference, see Eder et al. (2016), <https://journal.r-project.org/archive/2016/RJ-2016-007/index.html>. You are also encouraged to visit the Computational Stylistics Group's website <https://computationalstylistics.github.io/>, where a reasonable amount of information about the package and related projects are provided.
|
2025-03-25 |
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r-crumblr
|
public |
Count ratio uncertainty modeling base linear regression
|
2025-03-25 |
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pear
|
public |
paired-end read merger
|
2025-03-25 |
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libpopcnt
|
public |
Fast C/C++ bit population count library
|
2025-03-25 |
|
gem3-mapper
|
public |
The GEM read mapper (v3).
|
2025-03-25 |
|
bs_call
|
public |
DNA methylation and variant Caller for Bisulfite Sequencing Data.
|
2025-03-25 |
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perl-net-ssleay
|
public |
Perl extension for using OpenSSL
|
2025-03-25 |
|
perl-io-compress
|
public |
IO Interface to compressed data files/buffers
|
2025-03-25 |
|
perl-compress-raw-zlib
|
public |
Basic utilities for writing tests.
|
2025-03-25 |
|
deeptoolsintervals
|
public |
A python module creating/accessing GTF-based interval trees with associated meta-data
|
2025-03-25 |
|
perl-perlio-gzip
|
public |
PerlIO interface to gzip/gunzip
|
2025-03-25 |
|
perl-string-approx
|
public |
Perl extension for approximate matching (fuzzy matching)
|
2025-03-25 |
|
perl-compress-raw-bzip2
|
public |
Low-Level Interface to bzip2 compression library
|
2025-03-25 |
|
perl-dbd-mysql
|
public |
A MySQL driver for the Perl5 Database Interface (DBI)
|
2025-03-25 |
|
mysql-connector-c
|
public |
MySQL Connector/C, the C interface for communicating with MySQL servers.
|
2025-03-25 |
|
perl-time-hires
|
public |
High resolution alarm, sleep, gettimeofday, interval timers
|
2025-03-25 |
|
py2bit
|
public |
A package for accessing 2bit files using lib2bit
|
2025-03-25 |
|
perl-bio-procedural
|
public |
Simple low-dependency procedural interfaces to BioPerl
|
2025-03-25 |
|
perl-set-intervaltree
|
public |
An interval tree implementation in PERL.
|
2025-03-25 |
|
perl-extutils-cppguess
|
public |
guess C++ compiler and flags
|
2025-03-25 |
|
perl-dbd-sqlite
|
public |
Self Contained RDBMS in a DBI Driver
|
2025-03-25 |
|
bioconductor-pcatools
|
public |
'PCAtools: Everything Principal Components Analysis'
|
2025-03-25 |
|
bedops
|
public |
High-performance genomic feature operations.
|
2025-03-25 |
|
plink2
|
public |
Whole genome association analysis toolset
|
2025-03-25 |
|
rsem
|
public |
RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data.
|
2025-03-25 |
|
star
|
public |
An RNA-seq read aligner.
|
2025-03-25 |
|
bioconductor-psichomics
|
public |
Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation
|
2025-03-25 |
|
gffread
|
public |
GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more.
|
2025-03-25 |
|
bioconductor-mofa2
|
public |
Multi-Omics Factor Analysis v2
|
2025-03-25 |
|
regtools
|
public |
Tools that integrate DNA-seq and RNA-seq data to help interpret mutations in a regulatory and splicing context.
|
2025-03-25 |
|
bioconductor-variantannotation
|
public |
Annotation of Genetic Variants
|
2025-03-25 |
|
ant
|
public |
Apache Ant is a Java library and command-line tool that mainly helps building software.
|
2025-03-25 |
|
perl-test-fatal
|
public |
incredibly simple helpers for testing code with exceptions
|
2025-03-25 |
|
perl-package-deprecationmanager
|
public |
Manage deprecation warnings for your distribution
|
2025-03-25 |
|
perl-sub-exporter-progressive
|
public |
Only use Sub::Exporter if you need it
|
2025-03-25 |
|
perl-ipc-system-simple
|
public |
Run commands simply, with detailed diagnostics
|
2025-03-25 |
|
perl-class-load
|
public |
A working (require "Class::Name") and more
|
2025-03-25 |
|
perl-dist-checkconflicts
|
public |
declare version conflicts for your dist
|
2025-03-25 |
|
perl-devel-overloadinfo
|
public |
introspect overloaded operators
|
2025-03-25 |
|
perl-sub-quote
|
public |
Efficient generation of subroutines via string eval
|
2025-03-25 |
|
perl-moose
|
public |
A postmodern object system for Perl 5
|
2025-03-25 |
