| Package Name | Access | Summary | Updated |
|---|---|---|---|
| neural-admixture | public | Rapid population clustering with autoencoders | 2025-03-25 |
| gnomix | public | A fast, scalable, and accurate local ancestry method | 2025-03-25 |
| yadm | public | Yet Another Dotfiles Manager | 2025-03-25 |
| r-cellchat | public | R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics | 2025-03-25 |
| r-nmf | public | Provides a framework to perform Non-negative Matrix Factorization (NMF). The package implements a set of already published algorithms and seeding methods, and provides a framework to test, develop and plug new/custom algorithms. Most of the built-in algorithms have been optimized in C++, and the main interface function provides an easy way of performing parallel computations on multicore machines. | 2025-03-25 |
| otters | public | Omnibus Transcriptome Test using Expression Reference Summary data | 2025-03-25 |
| bgw-twas | public | Bayesian Genome-wide (BGW) TWAS | 2025-03-25 |
| tmux-xpanes | public | Ultimate terminal divider powered by tmux | 2025-03-25 |
| tensorqtl | public | GPU-accelerated QTL mapper | 2025-03-25 |
| metal | public | Tool for the meta-analysis of genome-wide association studies | 2025-03-25 |
| qtl | public | Utilities for analyzing and visualizing QTL data | 2025-03-25 |
| r-colorout | public | Colorize R Output on Terminal Emulators | 2025-03-25 |
| r-watershedr | public | Unsupervised probabilistic framework for identifying functional effects of rare variants | 2025-03-25 |
| chromocombine | public | Tool to help manage the large number of files generated when running ChromoPainter | 2025-03-25 |
| chromopainter | public | Tool for finding haplotypes in sequence data | 2025-03-25 |
| finestructure | public | Fast and powerful algorithm for identifying population structure using dense sequencing data | 2025-03-25 |
| r-flashr | public | Empirical Bayes Matrix Factorization | 2025-03-25 |
| r-cause | public | Causal Analysis Using Summary Effect Estimates | 2025-03-25 |
| r-omr | public | Omnigenic Mendelian Randomization | 2025-03-25 |
| r-mraid | public | Mendelian Randomization with Automated Instrument Determination | 2025-03-25 |
| r-twosamplemr | public | Two Sample MR Functions and Interface to MR Base Database | 2025-03-25 |
| r-radialmr | public | Mendelian randomization via radial regression | 2025-03-25 |
| r-pmr | public | Probabilistic two sample mendelian randomization | 2025-03-25 |
| r-mrraps | public | Robust statistical inference for Mendelian randomization with many weak instruments | 2025-03-25 |
| r-mrpresso | public | Mendelian Randomization Pleiotropy RESidual Sum and Outlier | 2025-03-25 |
