| Package Name | Access | Summary | Updated |
|---|---|---|---|
| r-ecco | public | ECCO is implemented as an open source R package for determining the optimal number of PEER factors in eQTL mapping studies. | 2025-03-25 |
| r-coconet | public | Composite likelihood-based Covariance regression Network model for identification of trait-relevant tissues or cell types. | 2025-03-25 |
| mtpgs | public | mtPGS is a statistical method that leverages multiple traits to construct accurate polygenic scores (PGS) for a target trait of interest. | 2025-03-25 |
| macau | public | MACAU is the software implementing the Mixed model Association for Count data via data AUgmentation algorithm. | 2025-03-25 |
| r-sda4d | public | R package SDA4D for performing 4-dimensional sparse Bayesian tensor decomposition | 2025-03-25 |
| duohmm | public | A post-hoc pedigree phasing routine for use with SHAPEIT2 | 2025-03-25 |
| lemma | public | LEMMA (Linear Environment Mixed Model Analysis) aims to uncover GxE interactions between SNPs and a linear combination of multiple environmental variables. | 2025-03-25 |
| qctool | public | Command-line programs that manipulate gwas datasets and other genomic data. | 2025-03-25 |
| phaser | public | phasing and Allele Specific Expression from RNA-seq | 2025-03-25 |
| wasp | public | WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery | 2025-03-25 |
| swing | public | No Summary | 2025-03-25 |
| sushie | public | Software to perform multi-ancestry fine-mapping and estimate prediction weights for molQTL data | 2025-03-25 |
| bgen-reader | public | Bgen file format reader | 2025-03-25 |
| python_circos | public | Circos plots for python | 2025-03-25 |
| ktplotspy | public | Python library for plotting Cellphonedb results. Ported from ktplots R package. | 2025-03-25 |
| geosketch | public | Geometry-preserving random sampling | 2025-03-25 |
| cellphonedb | public | No Summary | 2025-03-25 |
| r-mr.cue | public | MR.CUE is a package for Mendelian randomization informs shared genetic etiology underlying exposure and outcome by interrogating correlated horizontal pleiotropy. | 2025-03-25 |
| r-mr.corr2 | public | MR.Corr2 is a package for two-sample Mendelian randomization using correlated instrumental variants accounting correlated horizontal pleiotropy. | 2025-03-25 |
| r-maxprobes | public | Maxprobes package collects cross-reactive probes of Illumina methylation array 450K and EPIC/850K. | 2025-03-25 |
| r-presto | public | Fast Wilcoxon and auROC | 2025-03-25 |
| teip | public | Masking tape to help commands do one thing well | 2025-03-25 |
| meme | public | Motif-based sequence analysis tools | 2025-03-25 |
| modisco-lite | public | Transcription Factor MOtif Discovery from Importance SCOres - lite | 2025-03-25 |
| modisco | public | TF MOtif Discovery from Importance SCOres | 2025-03-25 |
