|
perl-alien-build
|
public |
Build external dependencies for use in CPAN
|
2025-03-25 |
|
perl-xml-parser
|
public |
A perl module for parsing XML documents
|
2025-03-25 |
|
perl-math-cdf
|
public |
Generate probabilities and quantiles from several statistical probability functions
|
2025-03-25 |
|
perl-unix-processors
|
public |
Interface to processor (CPU) information
|
2025-03-25 |
|
r-fdrtool
|
public |
Estimates both tail area-based false discovery rates (Fdr) as well as local false discovery rates (fdr) for a variety of null models (p-values, z-scores, correlation coefficients, t-scores). The proportion of null values and the parameters of the null distribution are adaptively estimated from the data. In addition, the package contains functions for non-parametric density estimation (Grenander estimator), for monotone regression (isotonic regression and antitonic regression with weights), for computing the greatest convex minorant (GCM) and the least concave majorant (LCM), for the half-normal and correlation distributions, and for computing empirical higher criticism (HC) scores and the corresponding decision threshold.
|
2025-03-25 |
|
r-wgcna
|
public |
Functions necessary to perform Weighted Correlation Network Analysis on high-dimensional
data as originally described in Horvath and Zhang (2005) <doi:10.2202/1544-6115.1128>
and Langfelder and Horvath (2008) <doi:10.1186/1471-2105-9-559>. Includes functions
for rudimentary data cleaning, construction of correlation networks, module identification,
summarization, and relating of variables and modules to sample traits. Also includes
a number of utility functions for data manipulation and visualization.
|
2025-03-25 |
|
bioconductor-motifmatchr
|
public |
Fast Motif Matching in R
|
2025-03-25 |
|
bioconductor-dropletutils
|
public |
Utilities for Handling Single-Cell Droplet Data
|
2025-03-25 |
|
bioconductor-chromvar
|
public |
Chromatin Variation Across Regions
|
2025-03-25 |
|
bioconductor-rdisop
|
public |
Decomposition of Isotopic Patterns
|
2025-03-25 |
|
bioconductor-hdf5array
|
public |
HDF5 backend for DelayedArray objects
|
2025-03-25 |
|
bioconductor-tfbstools
|
public |
Software Package for Transcription Factor Binding Site (TFBS) Analysis
|
2025-03-25 |
|
bioconductor-rhdf5
|
public |
R Interface to HDF5
|
2025-03-25 |
|
bioconductor-cner
|
public |
CNE Detection and Visualization
|
2025-03-25 |
|
bioconductor-rhdf5filters
|
public |
HDF5 Compression Filters
|
2025-03-25 |
|
bioconductor-rtracklayer
|
public |
R interface to genome annotation files and the UCSC genome browser
|
2025-03-25 |
|
r-restfulr
|
public |
Models a RESTful service as if it were a nested R list.
|
2025-03-25 |
|
bioconductor-genomicalignments
|
public |
Representation and manipulation of short genomic alignments
|
2025-03-25 |
|
bioconductor-bluster
|
public |
Clustering Algorithms for Bioconductor
|
2025-03-25 |
|
bioconductor-deseq2
|
public |
Differential gene expression analysis based on the negative binomial distribution
|
2025-03-25 |
|
bioconductor-scuttle
|
public |
Single-Cell RNA-Seq Analysis Utilities
|
2025-03-25 |
|
bioconductor-rsamtools
|
public |
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
|
2025-03-25 |
|
bioconductor-biocneighbors
|
public |
Nearest Neighbor Detection for Bioconductor Packages
|
2025-03-25 |
|
bioconductor-beachmat
|
public |
Compiling Bioconductor to Handle Each Matrix Type
|
2025-03-25 |
|
bioconductor-metapod
|
public |
Meta-Analyses on P-Values of Differential Analyses
|
2025-03-25 |
