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r-flashier
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public |
A faster and angrier package for EBMF
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2025-03-25 |
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r-ebnm
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public |
Provides simple, fast, and stable functions to fit the normal means model using empirical Bayes. For available models and details, see function ebnm(). A comprehensive introduction to the package is provided by Willwerscheid and Stephens (2021) <arXiv:2110.00152>.
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2025-03-25 |
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r-deconvolver
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public |
Empirical Bayes methods for learning prior distributions from data. An unknown prior distribution (g) has yielded (unobservable) parameters, each of which produces a data point from a parametric exponential family (f). The goal is to estimate the unknown prior ("g-modeling") by deconvolution and Empirical Bayes methods. Details and examples are in the paper by Narasimhan and Efron (2020, <doi:10.18637/jss.v094.i11>).
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2025-03-25 |
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r-horseshoe
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public |
Contains functions for applying the horseshoe prior to high- dimensional linear regression, yielding the posterior mean and credible intervals, amongst other things. The key parameter tau can be equipped with a prior or estimated via maximum marginal likelihood estimation (MMLE). The main function, horseshoe, is for linear regression. In addition, there are functions specifically for the sparse normal means problem, allowing for faster computation of for example the posterior mean and posterior variance. Finally, there is a function available to perform variable selection, using either a form of thresholding, or credible intervals.
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2025-03-25 |
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king
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public |
`Kinship-based INference for Gwas (KING) is a toolset that makes use of high-throughput SNP data typically seen in a genome-wide association study <http://people.virginia.edu/~wc9c/KING/>`_
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2025-03-25 |
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dune
|
public |
A composable build system for OCaml.
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2025-03-25 |
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ensembl-vep
|
public |
Ensembl Variant Effect Predictor
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2025-03-25 |
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lpmd_array
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public |
Tool for calculating local pairwise methylation disorder
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2025-03-25 |
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pspg
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public |
Unix pager optimized for psql
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2025-03-25 |
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pileup_region
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public |
A simple rust application to count alt reads in a specified list of positions.
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2025-03-25 |
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r-archr
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public |
Analysis of Regulatory Chromatin in R
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2025-03-25 |
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ocamlformat
|
public |
Auto-formatter for OCaml code
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2025-03-25 |
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comby
|
public |
Tool for changing code across many languages
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2025-03-25 |
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shelltestrunner
|
public |
Portable command-line tool for testing command-line programs
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2025-03-25 |
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cabal-fmt
|
public |
An experiment of formatting .cabal files
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2025-03-25 |
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stylish-haskell
|
public |
Haskell code prettifier
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2025-03-25 |
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fourmolu
|
public |
Formatter for Haskell source code
|
2025-03-25 |
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cabal-install
|
public |
Command-line interface for Cabal and Hackage
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2025-03-25 |
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dtools
|
public |
Ancillary tools for the D programming language compiler
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2025-03-25 |
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dub
|
public |
Package and build management system for D
|
2025-03-25 |
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r-tidymass
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public |
The 'tidymass' package is a collection of several packages for Mass Spectrometry data processing and analysis.
|
2025-03-25 |
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r-metpath
|
public |
This package is used to do statistical data analysis for and pathway enrichment analysi for metabolomics data.
|
2025-03-25 |
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r-massqc
|
public |
This package is used to do quality control and assessment of untargeted metabolomics data.
|
2025-03-25 |
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r-metid
|
public |
Metabolite identification using MS1 and MS2 databases. metid is an R package that combines information from all major databases for comprehensive and streamlined compound annotation.
|
2025-03-25 |
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r-massstat
|
public |
This package is used to do statistical analysis for LC-MS based metabolomics data.
|
2025-03-25 |
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r-masscleaner
|
public |
This package is uesd to do the data cleaning for LC-MS metabolomics data.
|
2025-03-25 |
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r-massprocessor
|
public |
This package is used to do raw data processing of LC-MS untargeted metabolomics processing.
|
2025-03-25 |
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r-massdataset
|
public |
massdata provide a uniform and stanford data structure of mass spectrometry experimental data.
|
2025-03-25 |
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r-masstools
|
public |
This package contains a lot of base functions which can be used for mass spectrometry and metabolomics data processing and analysis.
|
2025-03-25 |
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r-pgenlibr
|
public |
A thin wrapper over PLINK 2's core libraries
|
2025-03-25 |
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r-mrcml
|
public |
R Package applying MRcML methods
|
2025-03-25 |
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r-mr.divw
|
public |
Debiased Inverse-Variance Weighted Estimator in Two-Sample Summary-Data Mendelian Randomization
|
2025-03-25 |
|
r-mr-apss
|
public |
Mendelian Randomization accounting for Pleiotropy and Sample Structure using genome-wide summary statistics
|
2025-03-25 |
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dfmt
|
public |
Formatter for D source code
|
2025-03-25 |
|
serve-d
|
public |
D LSP server
|
2025-03-25 |
|
dmd
|
public |
D programming language compiler
|
2025-03-25 |
|
ldc
|
public |
The LLVM-based D Compiler
|
2025-03-25 |
|
ncdu
|
public |
NCurses Disk Usage
|
2025-03-25 |
|
qsv
|
public |
Ultra-fast CSV data-wrangling toolkit
|
2025-03-25 |
|
mprocs
|
public |
Run multiple commands in parallel
|
2025-03-25 |
|
lua-language-server
|
public |
Language Server for the Lua language
|
2025-03-25 |
|
bibclean
|
public |
BibTeX bibliography file pretty printer and syntax checker
|
2025-03-25 |
|
xplr
|
public |
Hackable, minimal, fast TUI file explorer
|
2025-03-25 |
|
vscode-json-languageserver
|
public |
VSCode JSON Language Server
|
2025-03-25 |
|
solargraph
|
public |
Ruby language server
|
2025-03-25 |
|
rush
|
public |
A cross-platform command-line tool for executing jobs in parallel
|
2025-03-25 |
|
prettierd
|
public |
prettier, as a daemon, for ludicrous formatting speed
|
2025-03-25 |
|
luaformatter
|
public |
Code formatter for Lua
|
2025-03-25 |
|
kalker
|
public |
Full-featured calculator with math syntax
|
2025-03-25 |
|
gpg-tui
|
public |
Manage your GnuPG keys with ease!
|
2025-03-25 |
