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zprint
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public |
Executables, uberjar, and library to beautifully format Clojure and Clojurescript source code and s-expressions.
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2025-03-25 |
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cljstyle
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public |
A tool for formatting Clojure code
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2025-03-25 |
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mipgen
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public |
One stop MIP design and analysis
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2025-03-25 |
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bcl2fastq2
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public |
Demultiplex sequencing data and converts base call (BCL) files into FASTQ files.
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2025-03-25 |
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r-pcaforqtl
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public |
This package offers tips and functions for using PCA as a hidden variable inference method in QTL mapping.
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2025-03-25 |
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r-tidyukbiobank
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public |
R-based package that you to easily extract, subset, and parse diagnositic (icd, cancer related, self reported dxs, etc.) from the UK Biobank dataset.
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2025-03-25 |
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r-rcppclock
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public |
RcppClock is a simple wrapper for std::chrono::high_resolution_clock that makes benchmarking Rcpp code easy.
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2025-03-25 |
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lua54-lpeg
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public |
Parsing Expression Grammars For Lua
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2025-03-25 |
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digestif
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public |
A language server for TeX and friends
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2025-03-25 |
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teal
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public |
The compiler for Teal, a typed dialect of Lua
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2025-03-25 |
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luacheck
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public |
A tool for linting and static analysis of Lua code.
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2025-03-25 |
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lua-argparse
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public |
Feature-rich command line parser for Lua
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2025-03-25 |
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lua-luafilesystem
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public |
LuaFileSystem is a Lua library developed to complement the set of functions related to file systems offered by the standard Lua distribution.
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2025-03-25 |
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treeshrink
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public |
an algorithm for detecting (and removing) abnormally long branches in one or more phylogenetic trees
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2025-03-25 |
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perl-bio-db-hts
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public |
Read files using HTSlib including BAM/CRAM, Tabix and BCF database files
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2025-03-25 |
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perl-bio-bigfile
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public |
Low-level interface to BigWig & BigBed files
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2025-03-25 |
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pasta
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public |
An implementation of the PASTA (Practical Alignment using Sate and TrAnsitivity) algorithm
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2025-03-25 |
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probalign
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public |
Probalign: multiple sequence alignment using partition function posterior probabilities
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2025-03-25 |
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opal
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public |
Opal is software for aligning multiple biological sequences.
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2025-03-25 |
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contralign
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public |
CONditional TRAining for Biosequence Analysis
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2025-03-25 |
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rb-mustache
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public |
framework-agnostic way to render logic-free views
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2025-03-25 |
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ronn
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public |
Builds manuals - the opposite of roff
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2025-03-25 |
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rb-rdiscount
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public |
Fast Implementation of Gruber's Markdown in C
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2025-03-25 |
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rb-hpricot
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public |
a swift, liberal HTML parser with a fantastic library
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2025-03-25 |
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r-qrank
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public |
A Quantile Rank-score based test for the identification of expression quantitative trait loci.
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2025-03-25 |
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ldetect
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public |
Package for detecting regions of linkage disequilibrium in the human genome
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2025-03-25 |
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pup
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public |
Parsing HTML at the command line
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2025-03-25 |
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libsixel
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public |
SIXEL encoder/decoder implementation
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2025-03-25 |
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jq-lsp
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public |
jq language server
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2025-03-25 |
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groovy-language-server
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public |
A language server for Groovy
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2025-03-25 |
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git-fixup
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public |
Fighting the copy-paste element of your rebase workflow.
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2025-03-25 |
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colortail
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public |
Like the tail command line utility but with colors
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2025-03-25 |
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sda
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public |
A program for sparse Bayesian matrix and tensor decomposition.
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2025-03-25 |
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impute5
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public |
IMPUTE 5 is a genotype imputation method that can scale to reference panels with millions of samples.
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2025-03-25 |
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snptest
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public |
SNPTEST is a program for the analysis of single SNP association in genome-wide studies.
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2025-03-25 |
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meta
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public |
META is a program for the meta analysis of genome-wide association studies.
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2025-03-25 |
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gtool
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public |
GTOOL is a program for transforming sets of genotype data for use with the programs SNPTEST and IMPUTE.
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2025-03-25 |
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vipcca
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public |
No Summary
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2025-03-25 |
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r-pqlseq
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public |
An efficient tool designed for differential analysis of large-scale RNA sequencing (RNAseq) data and Bisulfite sequencing (BSseq) data in the presence of individual relatedness and population structure. 'PQLseq' first fits a Generalized Linear Mixed Model (GLMM) with adjusted covariates, predictor of interest and random effects to account for population structure and individual relatedness, and then performs Wald tests for each gene in RNAseq or site in BSseq.
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2025-03-25 |
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r-viper
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public |
The package implements a straightforward, accurate, free-of-tuning, and relatively computationally efficient scRNAseq imputation method.
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2025-03-25 |
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r-metro
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public |
Multi-ancEstry TRanscriptOme-wide analysis
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2025-03-25 |
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r-mesusie
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public |
Multi-ancestry Sum of the Single Effects Model
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2025-03-25 |
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r-image
|
public |
MQTL mapping in bisulfite sequencing studies by fitting a binomial mixed model, incorporating allelic-specific methylation pattern.
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2025-03-25 |
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r-idea
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public |
iDEA is a new method for analyzing single-cell RNAseq data.
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2025-03-25 |
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r-gift
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public |
GIFT is an R package for efficient statistical inference of conditional TWAS fine-mapping.
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2025-03-25 |
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r-gecko
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public |
Genetic and Environmental Covariance Estimation by Composite-Likelihood Optimization
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2025-03-25 |
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r-ecco
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public |
ECCO is implemented as an open source R package for determining the optimal number of PEER factors in eQTL mapping studies.
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2025-03-25 |
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r-coconet
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public |
Composite likelihood-based Covariance regression Network model for identification of trait-relevant tissues or cell types.
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2025-03-25 |
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mtpgs
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public |
mtPGS is a statistical method that leverages multiple traits to construct accurate polygenic scores (PGS) for a target trait of interest.
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2025-03-25 |
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macau
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public |
MACAU is the software implementing the Mixed model Association for Count data via data AUgmentation algorithm.
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2025-03-25 |
