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dnachun / packages

Package Name Access Summary Updated
r-cytotrace2 public CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data. 2025-03-25
r-hiclimr public A tool for Hierarchical Climate Regionalization applicable to any correlation-based clustering. It adds several features and a new clustering method (called, 'regional' linkage) to hierarchical clustering in R ('hclust' function in 'stats' library): data regridding, coarsening spatial resolution, geographic masking, contiguity-constrained clustering, data filtering by mean and/or variance thresholds, data preprocessing (detrending, standardization, and PCA), faster correlation function with preliminary big data support, different clustering methods, hybrid hierarchical clustering, multivariate clustering (MVC), cluster validation, visualization of regionalization results, and exporting region map and mean timeseries into NetCDF-4 file. 2025-03-25
pansyn public A comprehensive software tool for genome synteny analysis. 2025-03-25
bioconductor-pwalign public Perform pairwise sequence alignments 2025-03-25
mcl public MCL - a cluster algorithm for graphs. 2025-03-25
bioconductor-biovizbase public Basic graphic utilities for visualization of genomic data. 2025-03-25
blast public BLAST+ is a new suite of BLAST tools that utilizes the NCBI C++ Toolkit. 2025-03-25
rpsbproc public RpsbProc, the post-RPSBLAST Processing Utility. 2025-03-25
synphoni public Watershed-SV extends Watershed to model the impact of rare SVs 2025-03-25
biber public Backend processor for BibLaTeX 2025-03-25
perl-unicode-collate public Unicode Collation Algorithm 2025-03-25
perl-unicode-linebreak public Perl Unicode module 2025-03-25
perl-perlio-utf8_strict public Fast and correct UTF-8 IO 2025-03-25
perl-xml-libxslt public Interface to GNOME libxslt library 2025-03-25
perl-sort-key public the fastest way to sort anything in Perl 2025-03-25
perl-text-roman public Allows conversion between Roman and Arabic algarisms. 2025-03-25
perl-text-csv_xs public Comma-Separated Values manipulation routines 2025-03-25
perl-mozilla-ca public Mozilla's CA cert bundle in PEM format 2025-03-25
perl-business-ismn public work with International Standard Music Numbers 2025-03-25
perl-tie-cycle public Cycle through a list of values via a scalar. 2025-03-25
perl-business-issn public Perl extension for International Standard Serial Numbers 2025-03-25
perl-data-compare public compare perl data structures 2025-03-25
perl-file-find-rule public command line wrapper to File::Find::Rule 2025-03-25
perl-data-uniqid public Perl extension for simple genrating of unique id's 2025-03-25
perl-datetime-calendar-julian public DateTime object in the Julian calendar 2025-03-25

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