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gtex-pipeline-gene_model
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public |
GTEx & TOPMed data production and analysis pipelines - gene model component
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2025-03-25 |
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cugg
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public |
Modules for LD computing, liftover and region extraction
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2025-03-25 |
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nbdev
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public |
Create delightful software with Jupyter Notebooks
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2025-03-25 |
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fastscript
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public |
A fast way to turn your python function into a script
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2025-03-25 |
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pybgen
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public |
Python module to read BGEN files.
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2025-03-25 |
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python-ldstore
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public |
A package for reading files created by LDstore
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2025-03-25 |
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ldstore
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public |
LDstore is a computationally efficient program for estimating and storing Linkage Disequilibrium (SNP correlations).
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2025-03-25 |
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apex
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public |
Toolkit for QTL mapping and meta-analysis.
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2025-03-25 |
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taywee-args
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public |
A simple header-only C++ argument parser library.
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2025-03-25 |
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r-flashpcar
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public |
Fast Principal Component Analysis of Large-Scale Genome-Wide Data
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2025-03-25 |
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r-leafcutter
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public |
Alternative Splicing Quantification, Differential Splicing, Outlier Splicing Detection, and Splicing QTL Mapping
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2025-03-25 |
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r-tailrank
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public |
Implements the tail-rank statistic for selecting biomarkers from a microarray data set, an efficient nonparametric test focused on the distributional tails. See <https://gitlab.com/krcoombes/coombeslab/-/blob/master/doc/papers/tolstoy-new.pdf>.
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2025-03-25 |
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r-gwasrapidd
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public |
'GWAS' R 'API' Data Download. This package provides easy access to the 'NHGRI'-'EBI' 'GWAS' Catalog data by accessing the 'REST' 'API' <https://www.ebi.ac.uk/gwas/rest/docs/api/>.
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2025-03-25 |
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r-concatenate
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public |
Simple functions for joining strings. Construct human-friendly messages whose elements aren't known in advance, like in stop, warning, or message, from clean code.
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2025-03-25 |
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r-mvf.susie.alpha
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public |
Multivariate Sum of Single Functions
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2025-03-25 |
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r-susif.alpha
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public |
Draft package for "Sum of Single Functions" method.
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2025-03-25 |
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r-mvsusier
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public |
Implements a multivariate generalization of the "Sum of Single Effects" (SuSiE) model for variable selection in multivariate linear regression.
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2025-03-25 |
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r-udr
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public |
R package implementing empirical Bayes methods for multivariate normal means.
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2025-03-25 |
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r-flashier
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public |
A faster and angrier package for EBMF
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2025-03-25 |
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r-ebnm
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public |
Provides simple, fast, and stable functions to fit the normal means model using empirical Bayes. For available models and details, see function ebnm(). A comprehensive introduction to the package is provided by Willwerscheid and Stephens (2021) <arXiv:2110.00152>.
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2025-03-25 |
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r-deconvolver
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public |
Empirical Bayes methods for learning prior distributions from data. An unknown prior distribution (g) has yielded (unobservable) parameters, each of which produces a data point from a parametric exponential family (f). The goal is to estimate the unknown prior ("g-modeling") by deconvolution and Empirical Bayes methods. Details and examples are in the paper by Narasimhan and Efron (2020, <doi:10.18637/jss.v094.i11>).
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2025-03-25 |
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king
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public |
`Kinship-based INference for Gwas (KING) is a toolset that makes use of high-throughput SNP data typically seen in a genome-wide association study <http://people.virginia.edu/~wc9c/KING/>`_
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2025-03-25 |
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dune
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public |
A composable build system for OCaml.
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2025-03-25 |
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ensembl-vep
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public |
Ensembl Variant Effect Predictor
|
2025-03-25 |
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lpmd_array
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public |
Tool for calculating local pairwise methylation disorder
|
2025-03-25 |
