|
seqlib
|
public |
C++ htslib/bwa-mem/fermi interface for interrogating sequence data
|
2025-03-25 |
|
fermi-lite_seqlib
|
public |
Standalone C library for assembling Illumina short reads in small regions (SeqLib fork)
|
2025-03-25 |
|
bwa_seqlib
|
public |
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences (fork for SeqLib)
|
2025-03-25 |
|
perl-io-tty
|
public |
Pseudo ttys and constants
|
2025-03-25 |
|
perl-file-remove
|
public |
Remove files and directories
|
2025-03-25 |
|
rfmix
|
public |
Local Ancestry and Admixture Inference Version 2
|
2025-03-25 |
|
the_silver_searcher
|
public |
A code searching tool similar to ack, with a focus on speed.
|
2025-03-25 |
|
gcta_nr_robust
|
public |
Robust version of GCTA for heritability estimation in FUSION
|
2025-03-25 |
|
plink
|
public |
Whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner.
|
2025-03-25 |
|
shrinkwrap
|
public |
A std::streambuf wrapper for compression formats.
|
2025-03-25 |
|
bioconductor-scran
|
public |
Methods for Single-Cell RNA-Seq Data Analysis
|
2025-03-25 |
|
bioconductor-batchelor
|
public |
Single-Cell Batch Correction Methods
|
2025-03-25 |
|
bioconductor-biocsingular
|
public |
Singular Value Decomposition for Bioconductor Packages
|
2025-03-25 |
|
perl-xml-libxml
|
public |
Interface to Gnome libxml2 xml parsing and DOM library
|
2025-03-25 |
|
perl-alien-libxml2
|
public |
Install the C libxml2 library on your system
|
2025-03-25 |
|
perl-dbi
|
public |
Database independent interface for Perl
|
2025-03-25 |
|
perl-db_file
|
public |
DB_File is a module which allows Perl programs to make use of the facilities provided by Berkeley DB
|
2025-03-25 |
|
perl-cgi
|
public |
A generic file fetching mechanism
|
2025-03-25 |
|
perl-alien-build
|
public |
Build external dependencies for use in CPAN
|
2025-03-25 |
|
perl-xml-parser
|
public |
A perl module for parsing XML documents
|
2025-03-25 |
|
perl-math-cdf
|
public |
Generate probabilities and quantiles from several statistical probability functions
|
2025-03-25 |
|
perl-unix-processors
|
public |
Interface to processor (CPU) information
|
2025-03-25 |
|
r-fdrtool
|
public |
Estimates both tail area-based false discovery rates (Fdr) as well as local false discovery rates (fdr) for a variety of null models (p-values, z-scores, correlation coefficients, t-scores). The proportion of null values and the parameters of the null distribution are adaptively estimated from the data. In addition, the package contains functions for non-parametric density estimation (Grenander estimator), for monotone regression (isotonic regression and antitonic regression with weights), for computing the greatest convex minorant (GCM) and the least concave majorant (LCM), for the half-normal and correlation distributions, and for computing empirical higher criticism (HC) scores and the corresponding decision threshold.
|
2025-03-25 |
|
r-wgcna
|
public |
Functions necessary to perform Weighted Correlation Network Analysis on high-dimensional
data as originally described in Horvath and Zhang (2005) <doi:10.2202/1544-6115.1128>
and Langfelder and Horvath (2008) <doi:10.1186/1471-2105-9-559>. Includes functions
for rudimentary data cleaning, construction of correlation networks, module identification,
summarization, and relating of variables and modules to sample traits. Also includes
a number of utility functions for data manipulation and visualization.
|
2025-03-25 |
|
bioconductor-motifmatchr
|
public |
Fast Motif Matching in R
|
2025-03-25 |
