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r-hyprcoloc
|
public |
Hypothesis Prioritisation in multi-trait Colocalization (HyPrColoc)
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2025-03-25 |
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fastx_toolkit
|
public |
The FASTX-Toolkit is a collection of command line tools for
Short-Reads FASTA/FASTQ files preprocessing.
Next-Generation sequencing machines usually produce FASTA or FASTQ files,
containing multiple short-reads sequences (possibly with quality
information).
The main processing of such FASTA/FASTQ files is mapping (aka aligning) the
sequences to reference genomes or other databases using specialized
programs. Example of such mapping programs are: Blat, SHRiMP, LastZ, MAQ
and many many others
However, it is sometimes more productive to preprocess the FASTA/FASTQ files
before mapping the sequences to the genome - manipulating the sequences to
produce better mapping results.
The FASTX-Toolkit tools perform some of these preprocessing tasks.'
|
2025-03-25 |
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perl-gdtextutil
|
public |
Text utilities for use with GD
|
2025-03-25 |
|
perl-gd
|
public |
Perl interface to the gd2 graphics library
|
2025-03-25 |
|
perl-extutils-constant
|
public |
generate XS code to import C header constants
|
2025-03-25 |
|
libgtextutils
|
public |
Gordon Text utils Library
|
2025-03-25 |
|
polyfun
|
public |
PolyFun (POLYgenic FUNctionally-informed fine-mapping)
|
2025-03-25 |
|
r-mrinstruments
|
public |
Data objects for various sets of instruments
|
2025-03-25 |
|
r-topr
|
public |
A collection of functions for visualizing,exploring and annotating genetic association results.Association results from multiple traits can be viewed simultaneously along with gene annotation, over the entire genome (Manhattan plot) or in the more detailed regional view.
|
2025-03-25 |
|
r-enshuman
|
public |
Gene information from 'Ensembl' genome builds 'GRCh38.p14' and 'GRCh37.p13' to use with the 'topr' package.
|
2025-03-25 |
|
snpeff
|
public |
Genetic variant annotation and effect prediction toolbox
|
2025-03-25 |
|
leafcutter_scripts
|
public |
Alternative Splicing Quantification, Differential Splicing, Outlier Splicing Detection, and Splicing QTL Mapping - scripts
|
2025-03-25 |
|
r-tidytof
|
public |
An R package for analyzing high-dimensional cytometry data using the tidyverse.
|
2025-03-25 |
|
bioconductor-flowcore
|
public |
flowCore: Basic structures for flow cytometry data
|
2025-03-25 |
|
cassi
|
public |
Genome-Wide Interaction Analysis Software
|
2025-03-25 |
|
r-feather
|
public |
Read and write feather files, a lightweight binary columnar data store designed for maximum speed.
|
2025-03-25 |
|
bioconductor-rprotobuflib
|
public |
C++ headers and static libraries of Protocol buffers
|
2025-03-25 |
|
fastlmmc
|
public |
Factored Spectrally Transformed Linear Mixed Model
|
2025-03-25 |
|
fastlmm
|
public |
Fast GWAS
|
2025-03-25 |
|
pysnptools
|
public |
PySnpTools
|
2025-03-25 |
|
fastlmmclib
|
public |
Fast GWAS
|
2025-03-25 |
|
elapsed
|
public |
Elapsed time C library.
|
2025-03-25 |
|
cbgen
|
public |
Python wrapper around a BGEN library
|
2025-03-25 |
|
r-hudson
|
public |
This package creates mirrored Manhattan (Hudson) plots for *ome-wide association analyses, including, but not limited to, GWAS, PheWAS, and EWAS.
|
2025-03-25 |
|
bwa-mem2
|
public |
The next version of bwa-mem
|
2025-03-25 |
