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sprint
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public |
No Summary
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2025-07-25 |
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parallel-disk-usage
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public |
Highly parallelized, blazing fast directory tree analyzer
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2025-07-23 |
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reditools3
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public |
A new REDItools implementation to speed-up the RNA editing profiling in massive RNAseq data
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2025-07-23 |
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alphagenome
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public |
A Python SDK for interacting and visualizing genomic models.
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2025-07-22 |
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cdxgen
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public |
Creates CycloneDX Software Bill of Materials (SBOM) from source or container image
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2025-07-11 |
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pacvim
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public |
Learn vim commands via a game
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2025-07-09 |
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r-pecotmr
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public |
pecotmr implements pair-wise enrichment, colocalization, TWAS and Mendelian Randomization to integrate QTL and GWAS analysis based on a fine-mapped single effects model.
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2025-07-08 |
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r-qgg
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public |
'Provides an infrastructure for efficient processing of large-scale genetic and phenotypic data including core functions for: 1) fitting linear mixed models, 2) constructing marker-based genomic relationship matrices, 3) estimating genetic parameters (heritability and correlation), 4) performing genomic prediction and genetic risk profiling, and 5) single or multi-marker association analyses. Rohde et al. (2019) <doi:10.1101/503631>.'
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2025-07-08 |
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enformer-pytorch
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public |
Enformer - Pytorch
|
2025-06-27 |
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borzoi-pytorch-gpu
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public |
The Borzoi model from Linder et al., but in Pytorch
|
2025-06-26 |
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savemoney
|
public |
Simple Algorithm for Very Efficient Multiplexing of Oxford Nanopore Experiments for You!
|
2025-06-24 |
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r-metap
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public |
The canonical way to perform meta-analysis involves using effect sizes. When they are not available this package provides a number of methods for meta-analysis of significance values including the methods of Edgington, Fisher, Lancaster, Stouffer, Tippett, and Wilkinson; a number of data-sets to replicate published
results; and a routine for graphical display.
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2025-06-19 |
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r-qqconf
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public |
Provides functionality for creating Quantile-Quantile (QQ) and Probability-Probability
(PP) plots with simultaneous testing bands to asses significance of sample deviation
from a reference distribution <doi:10.18637/jss.v106.i10>.
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2025-06-19 |
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gmato
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public |
GMATO : Microsatellite Analyzing Tool for Huge Genome at any size
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2025-06-14 |
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cmocka
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public |
An elegant unit testing framework for C with support for mock objects.
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2025-06-12 |
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personalbpnet
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public |
A small modification to bpnetlite's BPNet to accomodate large validation datasets.
|
2025-06-03 |
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bpnet-lite
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public |
bpnet-lite is a minimal implementation of BPNet, a neural network aimed at interpreting regulatory activity of the genome.
|
2025-06-03 |
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tangermeme
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public |
Biological sequence analysis for the modern age.
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2025-06-03 |
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clipnet
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public |
A deep learning approach to predicting transcription initiation from sequence at single nucleotide resolution
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2025-06-03 |
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silence-tensorflow
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public |
Simple python package to shut up Tensorflow warnings and logs.
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2025-06-03 |
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ipafinder
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public |
Systematic analyses of intronic polyadenylation from standard RNAseq data
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2025-06-02 |
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heroku
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public |
CLI to interact with Heroku
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2025-05-29 |
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borzoi-pytorch
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public |
The Borzoi model from Linder et al., but in Pytorch
|
2025-05-29 |
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nanoscope
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public |
Analysis pipeline for single-cell nano-CUT&Tag data
|
2025-05-20 |
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fragtk
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public |
Fragment file toolkit
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2025-05-20 |
