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dnachun / packages

Package Name Access Summary Updated
bool public Utility for finding files that match a boolean expression. 2025-03-25
sharutils public Makes so-called shell archives out of many files 2025-03-25
spell public A clone of the standard Unix program of the same name, implemented as a wrapper for Ispell 2025-03-25
gptfdisk public Text-mode partitioning tools 2025-03-25
direvent public Monitors events in the file system directories 2025-03-25
ddrescue public GNU data recovery tool 2025-03-25
ed public Classic UNIX line editor 2025-03-25
enscript public Convert text to Postscript, HTML, or RTF, with syntax highlighting 2025-03-25
units public GNU unit conversion tool 2025-03-25
cflow public Generate call graphs from C code 2025-03-25
mc public Terminal-based visual file manager 2025-03-25
cppi public Indent C preprocessor directives to reflect their nesting 2025-03-25
libextractor public Library to extract meta data from files 2025-03-25
libpaper public Library for handling paper characteristics 2025-03-25
dxpy public DNAnexus Platform API bindings for Python 2025-03-25
cadd-sv public No Summary 2025-03-25
cadd-scripts public No Summary 2025-03-25
synthego-ice public Synthego - Inference of CRISPR Edits (ICE) 2025-03-25
r-cytotrace2 public CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data. 2025-03-25
r-hiclimr public A tool for Hierarchical Climate Regionalization applicable to any correlation-based clustering. It adds several features and a new clustering method (called, 'regional' linkage) to hierarchical clustering in R ('hclust' function in 'stats' library): data regridding, coarsening spatial resolution, geographic masking, contiguity-constrained clustering, data filtering by mean and/or variance thresholds, data preprocessing (detrending, standardization, and PCA), faster correlation function with preliminary big data support, different clustering methods, hybrid hierarchical clustering, multivariate clustering (MVC), cluster validation, visualization of regionalization results, and exporting region map and mean timeseries into NetCDF-4 file. 2025-03-25
pansyn public A comprehensive software tool for genome synteny analysis. 2025-03-25
bioconductor-pwalign public Perform pairwise sequence alignments 2025-03-25
mcl public MCL - a cluster algorithm for graphs. 2025-03-25
bioconductor-biovizbase public Basic graphic utilities for visualization of genomic data. 2025-03-25
blast public BLAST+ is a new suite of BLAST tools that utilizes the NCBI C++ Toolkit. 2025-03-25

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