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dnachun / packages

Package Name Access Summary Updated
torch-spline-conv public Implementation of the Spline-Based Convolution Operator of SplineCNN in PyTorch 2025-04-04
r-minque public 'This package offers three important components: (1) to construct a use-defined linear:: mixed model, (2) to employ one of linear mixed model approaches: minimum norm quadratic - unbiased estimation (MINQUE) (Rao, 1971) for variance component estimation and random - effect prediction; and (3) to employ a jackknife resampling technique to conduct - various statistical tests. In addition, this package provides the function for model - or data evaluations.This R package offers fast computations for large data sets - "analyses for various irregular data structures.'" 2025-04-03
r-fsusier public Draft package for "Sum of Single Functions" method. 2025-04-03
r-smashr public An R package for smoothing & signal denoising using adaptive shrinkage. 2025-04-03
pegasusio public PegasusIO is the IO package for Pegasus. 2025-04-03
pegasuspy public An efficient Python analysis tool which scales to transcriptomes of millions of single cells. 2025-04-03
torch-cluster public PyTorch Extension Library of Optimized Graph Cluster Algorithms 2025-04-03
poppler-utils public Precompiled command-line utilities (based on Poppler) for manipulating PDF files and converting them to other formats. 2025-04-03
torchviz public A small package to create visualizations of PyTorch execution graphs 2025-04-03
scikit-misc public Miscellaneous tools for scientific computing. 2025-03-25
pyfit-sne public Python wrapper for FFT-accelerated Interpolation-based t-SNE (FIt-SNE) package. 2025-03-25
r-plinkqc public Genotyping arrays enable the direct measurement of an individuals genotype at thousands of markers. 'plinkQC' facilitates genotype quality control for genetic association studies as described by Anderson and colleagues (2010) <doi:10.1038/nprot.2010.116>. It makes 'PLINK' basic statistics (e.g. missing genotyping rates per individual, allele frequencies per genetic marker) and relationship functions accessible from 'R' and generates a per-individual and per-marker quality control report. Individuals and markers that fail the quality control can subsequently be removed to generate a new, clean dataset. Removal of individuals based on relationship status is optimised to retain as many individuals as possible in the study. 2025-03-25
quantas_cu public Tools for inference of gene transcript structure and quantification of gene expression and alternate splicing 2025-03-25
onepassword-cli public CLI for 1Password password manager 2025-03-25
keepassxc public KeePassXC is a cross-platform community-driven port of the Windows application “Keepass Password Safe”. 2025-03-25
botan public Crypto library written in C++ 2025-03-25
argon public The password hash Argon2, winner of PHC 2025-03-25
password-store public Stores, retrieves, generates, and synchronizes passwords securely 2025-03-25
dashlane-cli public Dashlane CLI - Access your secrets in your terminal, servers and CI/CD 2025-03-25
bitwarden-cli public A secure and free password manager for all of your devices. 2025-03-25
keepercommander public Keeper Commander for Python 3 2025-03-25
aiortc public An implementation of WebRTC and ORTC 2025-03-25
pylibsrtp public Python wrapper around the libsrtp library 2025-03-25
libsrtp public Library for SRTP (Secure Realtime Transport Protocol) 2025-03-25
splicetransformer public SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence 2025-03-25

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