|
fsharplint
|
public |
Lint tool for F#
|
2025-03-31 |
|
pywfa
|
public |
A python wrapper for wavefront alignment using WFA2-lib
|
2025-03-28 |
|
watershed-sv
|
public |
Watershed-SV extends Watershed to model the impact of rare SVs
|
2025-03-26 |
|
r-pecotmr
|
public |
pecotmr implements pair-wise enrichment, colocalization, TWAS and Mendelian Randomization to integrate QTL and GWAS analysis based on a fine-mapped single effects model.
|
2025-03-26 |
|
pegasuspy
|
public |
An efficient Python analysis tool which scales to transcriptomes of millions of single cells.
|
2025-03-25 |
|
scikit-misc
|
public |
Miscellaneous tools for scientific computing.
|
2025-03-25 |
|
pyfit-sne
|
public |
Python wrapper for FFT-accelerated Interpolation-based t-SNE (FIt-SNE) package.
|
2025-03-25 |
|
pegasusio
|
public |
PegasusIO is the IO package for Pegasus.
|
2025-03-25 |
|
r-plinkqc
|
public |
Genotyping arrays enable the direct measurement of an individuals genotype at thousands
of markers. 'plinkQC' facilitates genotype quality control for genetic association
studies as described by Anderson and colleagues (2010) <doi:10.1038/nprot.2010.116>.
It makes 'PLINK' basic statistics (e.g. missing genotyping rates per individual,
allele frequencies per genetic marker) and relationship functions accessible from
'R' and generates a per-individual and per-marker quality control report. Individuals
and markers that fail the quality control can subsequently be removed to generate
a new, clean dataset. Removal of individuals based on relationship status is optimised
to retain as many individuals as possible in the study.
|
2025-03-25 |
|
quantas_cu
|
public |
Tools for inference of gene transcript structure and quantification of gene expression and alternate splicing
|
2025-03-25 |
|
onepassword-cli
|
public |
CLI for 1Password password manager
|
2025-03-25 |
|
keepassxc
|
public |
KeePassXC is a cross-platform community-driven port of the Windows application “Keepass Password Safe”.
|
2025-03-25 |
|
botan
|
public |
Crypto library written in C++
|
2025-03-25 |
|
argon
|
public |
The password hash Argon2, winner of PHC
|
2025-03-25 |
|
password-store
|
public |
Stores, retrieves, generates, and synchronizes passwords securely
|
2025-03-25 |
|
dashlane-cli
|
public |
Dashlane CLI - Access your secrets in your terminal, servers and CI/CD
|
2025-03-25 |
|
bitwarden-cli
|
public |
A secure and free password manager for all of your devices.
|
2025-03-25 |
|
keepercommander
|
public |
Keeper Commander for Python 3
|
2025-03-25 |
|
aiortc
|
public |
An implementation of WebRTC and ORTC
|
2025-03-25 |
|
pylibsrtp
|
public |
Python wrapper around the libsrtp library
|
2025-03-25 |
|
libsrtp
|
public |
Library for SRTP (Secure Realtime Transport Protocol)
|
2025-03-25 |
|
splicetransformer
|
public |
SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence
|
2025-03-25 |
|
splicebert
|
public |
Primary RNA sequence model
|
2025-03-25 |
|
absplice
|
public |
Invoke py.test as distutils command with dependency resolution
|
2025-03-25 |
|
cyvcf2
|
public |
A cython wrapper around htslib built for fast parsing of Variant Call Format (VCF) files
|
2025-03-25 |
|
splicemap
|
public |
Invoke py.test as distutils command with dependency resolution
|
2025-03-25 |
|
fastbetabino3
|
public |
Superfast betabinomial fit implemented in Cython
|
2025-03-25 |
|
r-blipr
|
public |
A Bayesian Linear Program for resolution-adaptive signal detection
|
2025-03-25 |
|
r-rcbc
|
public |
An R interface to the CBC solver for mixed-integer linear programs.
|
2025-03-25 |
|
r-scalespikeslab
|
public |
A scalable Gibbs sampling implementation for high dimensional Bayesian regression
with the continuous spike-and-slab prior. Niloy Biswas, Lester Mackey and Xiao-Li
Meng, "Scalable Spike-and-Slab" (2022) <arXiv:2204.01668>.
|
2025-03-25 |
|
r-truncatednormal
|
public |
A collection of functions to deal with the truncated univariate and multivariate normal
and Student distributions, described in Botev (2017) <doi:10.1111/rssb.12162> and
Botev and L'Ecuyer (2015) <doi:10.1109/WSC.2015.7408180>.
|
2025-03-25 |
|
r-qrng
|
public |
Functionality for generating (randomized) quasi-random numbers in high dimensions.
|
2025-03-25 |
|
r-nprior
|
public |
We develop a unified and flexible Bayesian shrinkage procedure called "Neuronized Priors".
|
2025-03-25 |
|
r-immunelens
|
public |
Immune Lymphocyte Estimation from Nucleotide Sequencing (Immune LENS) is an R package to calculate T and B cell fractions from WGS or WES data from hg19 or hg38 aligned genomes. Includes functions from TcellExTRECT package for support of WES analysis.
|
2025-03-25 |
|
r-restriktor
|
public |
Allow for easy-to-use testing or evaluating of linear equality and inequality restrictions
about parameters and effects in (generalized) linear statistical models.
|
2025-03-25 |
|
r-norm
|
public |
An integrated set of functions for the analysis of multivariate normal datasets with
missing values, including implementation of the EM algorithm, data augmentation,
and multiple imputation.
|
2025-03-25 |
|
chrombpnet-variant-scorer
|
public |
A framework to score and analyze variant effects genome-wide using ChromBPNet models
|
2025-03-25 |
|
outrigger
|
public |
Outrigger detects *de novo* exons and quantifies their percent spliced-in
|
2025-03-25 |
|
r-susie.ash
|
public |
Variant of Sum of Single Effects (SuSiE) model with support for adaptive shrinkage (ash) prior
|
2025-03-25 |
|
r-mr.ash.alpha_mccreight
|
public |
An R package implementing Mr.ASH method
|
2025-03-25 |
|
dotnet-interactive
|
public |
.NET Interactive combines the power of .NET with many other languages to create notebooks, REPLs, and embedded coding experiences.
|
2025-03-25 |
|
lua-magick
|
public |
Lua bindings to ImageMagick for LuaJIT using FFI
|
2025-03-25 |
|
moonscript
|
public |
A language that compiles to Lua
|
2025-03-25 |
|
lua-alt-getopt
|
public |
Lua API for getopt similar to getopt_long(3)
|
2025-03-25 |
|
busted
|
public |
Elegant Lua unit testing.
|
2025-03-25 |
|
lua-term
|
public |
Terminal operations for Lua
|
2025-03-25 |
|
lua-luasystem
|
public |
Platform independent system calls for Lua
|
2025-03-25 |
|
lua-penlight
|
public |
A set of pure Lua libraries focusing on input data handling (such as reading configuration files), functional programming (such as map, reduce, placeholder expressions,etc), and OS path management.
|
2025-03-25 |
|
lua-dkjson
|
public |
David Kolf's JSON module for Lua
|
2025-03-25 |
|
lua-mediator_lua
|
public |
Mediator pattern implementation for pub-sub management
|
2025-03-25 |
