| Package Name | Access | Summary | Updated |
|---|---|---|---|
| gtex-pipeline-phaser | public | GTEx & TOPMed data production and analysis pipelines - phASER wrapper | 2025-09-23 |
| cadd-scripts-regseq | public | No Summary | 2025-09-19 |
| cadd-scripts-mmsplice | public | No Summary | 2025-09-19 |
| cadd-scripts-esmscore | public | No Summary | 2025-09-19 |
| concise | public | CONCISE (COnvolutional Neural for CIS-regulatory Elements) | 2025-09-19 |
| r-qgg | public | 'Provides an infrastructure for efficient processing of large-scale genetic and phenotypic data including core functions for: 1) fitting linear mixed models, 2) constructing marker-based genomic relationship matrices, 3) estimating genetic parameters (heritability and correlation), 4) performing genomic prediction and genetic risk profiling, and 5) single or multi-marker association analyses. Rohde et al. (2019) <doi:10.1101/503631>.' | 2025-09-06 |
| finemo_gpu | public | Fi-NeMo (Finding Neural network Motifs) is a GPU-accelerated hit caller for identifying occurrences of TFMoDISCo motifs. | 2025-09-05 |
| r-pecotmr | public | pecotmr implements pair-wise enrichment, colocalization, TWAS and Mendelian Randomization to integrate QTL and GWAS analysis based on a fine-mapped single effects model. | 2025-09-03 |
| ueberzugpp | public | Command line utility which allows to display images in the terminal, written in C++ | 2025-09-03 |
| r-gsmr2 | public | gsmr2 - a tool for causal inference between complex traits | 2025-09-02 |
| sprint | public | No Summary | 2025-07-25 |
| parallel-disk-usage | public | Highly parallelized, blazing fast directory tree analyzer | 2025-07-23 |
| reditools3 | public | A new REDItools implementation to speed-up the RNA editing profiling in massive RNAseq data | 2025-07-23 |
| alphagenome | public | A Python SDK for interacting and visualizing genomic models. | 2025-07-22 |
| cdxgen | public | Creates CycloneDX Software Bill of Materials (SBOM) from source or container image | 2025-07-11 |
| pacvim | public | Learn vim commands via a game | 2025-07-09 |
| enformer-pytorch | public | Enformer - Pytorch | 2025-06-27 |
| borzoi-pytorch-gpu | public | The Borzoi model from Linder et al., but in Pytorch | 2025-06-26 |
| savemoney | public | Simple Algorithm for Very Efficient Multiplexing of Oxford Nanopore Experiments for You! | 2025-06-24 |
| r-metap | public | The canonical way to perform meta-analysis involves using effect sizes. When they are not available this package provides a number of methods for meta-analysis of significance values including the methods of Edgington, Fisher, Lancaster, Stouffer, Tippett, and Wilkinson; a number of data-sets to replicate published results; and a routine for graphical display. | 2025-06-19 |
| r-qqconf | public | Provides functionality for creating Quantile-Quantile (QQ) and Probability-Probability (PP) plots with simultaneous testing bands to asses significance of sample deviation from a reference distribution <doi:10.18637/jss.v106.i10>. | 2025-06-19 |
| gmato | public | GMATO : Microsatellite Analyzing Tool for Huge Genome at any size | 2025-06-14 |
| cmocka | public | An elegant unit testing framework for C with support for mock objects. | 2025-06-12 |
| personalbpnet | public | A small modification to bpnetlite's BPNet to accomodate large validation datasets. | 2025-06-03 |
| bpnet-lite | public | bpnet-lite is a minimal implementation of BPNet, a neural network aimed at interpreting regulatory activity of the genome. | 2025-06-03 |
