|
r-here
|
public |
Constructs paths to your project's files. The 'here()' function uses a reasonable heuristics to find your project's files, based on the current working directory at the time when the package is loaded. Use it as a drop-in replacement for 'file.path()', it will always locate the files relative to your project root.
|
2025-03-25 |
|
r-exactranktests
|
public |
Computes exact conditional p-values and quantiles using an implementation of the Shift-Algorithm by Streitberg & Roehmel.
|
2025-03-25 |
|
r-maxstat
|
public |
Maximally selected rank statistics with several p-value approximations.
|
2025-03-25 |
|
r-ggsci
|
public |
A collection of 'ggplot2' color palettes inspired by plots in scientific journals, data visualization libraries, science fiction movies, and TV shows.
|
2025-03-25 |
|
r-ggrepel
|
public |
Provides text and label geoms for 'ggplot2' that help to avoid overlapping text labels. Labels repel away from each other and away from the data points.
|
2025-03-25 |
|
r-polynom
|
public |
A collection of functions to implement a class for univariate polynomial manipulations.
|
2025-03-25 |
|
r-survminer
|
public |
Contains the function 'ggsurvplot()' for drawing easily beautiful and 'ready-to-publish' survival curves with the 'number at risk' table and 'censoring count plot'. Other functions are also available to plot adjusted curves for `Cox` model and to visually examine 'Cox' model assumptions.
|
2025-03-25 |
|
r-survmisc
|
public |
A collection of functions to help in the analysis of right-censored survival data. These extend the methods available in package:survival.
|
2025-03-25 |
|
r-kmsurv
|
public |
Data sets and functions for Klein and Moeschberger (1997), "Survival Analysis, Techniques for Censored and Truncated Data", Springer.
|
2025-03-25 |
|
r-km.ci
|
public |
Computes various confidence intervals for the Kaplan-Meier estimator, namely: Petos CI, Rothman CI, CI's based on Greenwoods variance, Thomas and Grunkemeier CI and the simultaneous confidence bands by Nair and Hall and Wellner.
|
2025-03-25 |
|
r-ggpubr
|
public |
The 'ggplot2' package is excellent and flexible for elegant data visualization in R. However the default generated plots requires some formatting before we can send them for publication. Furthermore, to customize a 'ggplot', the syntax is opaque and this raises the level of difficulty for researchers with no advanced R programming skills. 'ggpubr' provides some easy-to-use functions for creating and customizing 'ggplot2'- based publication ready plots.
|
2025-03-25 |
|
r-cowplot
|
public |
Some helpful extensions and modifications to the 'ggplot2' package. In particular, this package makes it easy to combine multiple 'ggplot2' plots into one and label them with letters, e.g. A, B, C, etc., as is often required for scientific publications. The package also provides a streamlined and clean theme that is used in the Wilke lab, hence the package name, which stands for Claus O. Wilke's plot package.
|
2025-03-25 |
|
r-cmprsk
|
public |
Estimation, testing and regression modeling of subdistribution functions in competing risks, as described in Gray (1988), A class of K-sample tests for comparing the cumulative incidence of a competing risk, Ann. Stat. 16:1141-1154, and Fine JP and Gray RJ (1999), A proportional hazards model for the subdistribution of a competing risk, JASA, 94:496-509.
|
2025-03-25 |
|
r-promise
|
public |
ECG, Echocardiographic and demographic for 93,000 Duke University Medical Center patients.
|
2025-03-25 |
|
r-progress
|
public |
Configurable Progress bars, they may include percentage, elapsed time, and/or the estimated completion time. They work in terminals, in 'Emacs' 'ESS', 'RStudio', 'Windows' 'Rgui' and the 'macOS' 'R.app'. The package also provides a 'C++' 'API', that works with or without 'Rcpp'.
|
2025-03-25 |
|
r-datapackager
|
public |
A framework to help construct R data packages in a reproducible manner. Potentially time consuming processing of raw data sets into analysis ready data sets is done in a reproducible manner and decoupled from the usual R CMD build process so that data sets can be processed into R objects in the data package and the data package can then be shared, built, and installed by others without the need to repeat computationally costly data processing. The package maintains data provenance by turning the data processing scripts into package vignettes, as well as enforcing documentation and version checking of included data objects. Data packages can be version controlled in github, and used to share data for manuscripts, collaboration and general reproducibility.
|
2025-03-25 |
|
r-futile.logger
|
public |
Provides a simple yet powerful logging utility. Based loosely on log4j, futile.logger takes advantage of R idioms to make logging a convenient and easy to use replacement for cat and print statements.
|
2025-03-25 |
|
r-lambda.r
|
public |
A language extension to efficiently write functional programs in R. Syntax extensions include multi-part function definitions, pattern matching, guard statements, built-in (optional) type safety.
|
2025-03-25 |
|
r-futile.options
|
public |
A scoped options management framework. Used in other packages.
|
2025-03-25 |
|
r-tinytex
|
public |
Helper functions to install and maintain the 'LaTeX' distribution named 'TinyTeX' (<https://yihui.name/tinytex/>), a lightweight, cross-platform, portable, and easy-to-maintain version of 'TeX Live'. This package also contains helper functions to compile 'LaTeX' documents, and install missing 'LaTeX' packages automatically.
|
2025-03-25 |
|
r-xfun
|
public |
Miscellaneous functions commonly used in other packages maintained by 'Yihui Xie'.
|
2025-03-25 |
|
r-clisymbols
|
public |
A small subset of Unicode symbols, that are useful when building command line applications. They fall back to alternatives on terminals that do not support Unicode. Many symbols were taken from the 'figures' 'npm' package (see <https://github.com/sindresorhus/figures>).
|
2025-03-25 |
|
r-bookdown
|
public |
Output formats and utilities for authoring books and technical documents with R Markdown.
|
2025-03-25 |
|
r-rrtools
|
public |
Instructions, templates, and functions for making a basic compendium suitable for doing reproducible research with R.
|
2025-03-25 |
|
r-usethis
|
public |
Automate package and project setup tasks that are otherwise performed manually. This includes setting up unit testing, test coverage, continuous integration, Git, 'GitHub', licenses, 'Rcpp', 'RStudio' projects, and more.
|
2025-03-25 |
