| seqkit | 0.15.0 | Cross-platform and ultrafast toolkit for FASTA/Q file manipulation | Mar 25, 2025 | MIT |
| transposition_detector_detect | 1.0.0 | Transposition Event Detector "deTEct" - part of TransposonUltimate | Mar 25, 2025 | GPL3 |
| transposon_annotation_reasonate | 1.0.3 | Transposon Annotator "reasonaTE" - part of TransposonUltimate | Mar 25, 2025 | GPL3 |
| transposon_annotation_tools_helitronscanner | 1.0.0 | HelitronScannerv1.0, tool developed by Xiong et al. (2014) Proceedings of the National Academy of Sciences, https://doi.org/10.1073/pnas.1410068111, https://sourceforge.net/projects/helitronscanner/files/ | Mar 25, 2025 | BSD |
| transposon_annotation_tools_mitefinderii | 1.0.0 | MiteFinderIIv1.0, tool developed by Jialu et al. (2018) BMC Medical Genomics, https://bmcmedgenomics.biomedcentral.com/articles/10.1186/s12920-018-0418-y, https://github.com/jhu99/miteFinder | Mar 25, 2025 | BSD |
| transposon_annotation_tools_mitetracker | 1.0.1 | MiteTrackerv1.0, tool developed by Zavallo et al. (2018) BMC bioinformatics, https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2376-y, https://github.com/INTABiotechMJ/MITE-Tracker | Mar 25, 2025 | BSD |
| transposon_annotation_tools_mustv2 | 1.0.1 | MUSTv2, tool developed by Ge et al. (2017) Journal of integrative bioinformatics, https://doi.org/10.1515/jib-2017-0029, http://www.healthinformaticslab.org/supp/resources.php | Mar 25, 2025 | BSD |
| transposon_annotation_tools_proteinncbicdd1000 | 1.0.0 | NCBI CDD 1000 Protein Selection for Transposons, tool developed by Kevin Riehl (2021) | Mar 25, 2025 | BSD |
| transposon_annotation_tools_sinefinder | 1.0.1 | SineFinderv1.0.1, tool developed by Wenke et al. (2011) Plant Cell, https://doi.org/10.1105/tpc.111.088682 | Mar 25, 2025 | BSD |
| transposon_annotation_tools_sinescan | 1.1.2 | SINE_scanv1.1.1, tool developed by Mao & Wang (2017) Bioinformatics, https://doi.org/10.1093/bioinformatics/btw718, https://github.com/maohlzj/SINE_Scan | Mar 25, 2025 | BSD |
| transposon_annotation_tools_transposonpsicli | 1.0.0 | TransposonPSIv1.0, tool developed by Brian Haas (2010), http://transposonpsi.sourceforge.net/ | Mar 25, 2025 | BSD |
| transposon_classifier_rfsb | 1.0.0 | Transposon Classifier "RFSB" - part of TransposonUltimate | Mar 25, 2025 | GPL3 |
