conda-forge / packages

Package Name Access Summary Updated
pyproj public Python interface to PROJ.4 library 2019-08-19
r-blockfest public An R implementation of an extension of the 'BayeScan' software (Foll, 2008) <DOI:10.1534/genetics.108.092221> for codominant markers, adding the option to group individual SNPs into pre-defined blocks. A typical application of this new approach is the identification of genomic regions, genes, or gene sets containing one or more SNPs that evolved under directional selection. 2019-08-19
r-breakaway public Species richness estimation is an important problem in biodiversity analysis. This package provides methods for total species richness estimation (observed plus unobserved) and a method for modelling total diversity with covariates. breakaway() estimates total (observed plus unobserved) species richness. Microbial diversity datasets are characterized by a large number of rare species and a small number of highly abundant species. The class of models implemented by breakaway() is flexible enough to model both these features. breakaway_nof1() implements a similar procedure however does not require a singleton count. betta() provides a method for modelling total diversity with covariates in a way that accounts for its estimated nature and thus accounts for unobserved taxa, and betta_random() permits random effects modelling. 2019-08-19
hdf5 public HDF5 is a data model, library, and file format for storing and managing data 2019-08-19
r-bc3net public Implementation of the BC3NET algorithm for gene regulatory network inference (de Matos Simoes and Frank Emmert-Streib, Bagging Statistical Network Inference from Large-Scale Gene Expression Data, PLoS ONE 7(3): e33624, <doi:10.1371/journal.pone.0033624>). 2019-08-19
r-airr public Schema definitions and read, write and validation tools for data formatted in accordance with the AIRR Data Representation schemas defined by the AIRR Community <http://docs.airr-community.org>. 2019-08-19
r-ampliconduo public Increasingly powerful techniques for high-throughput sequencing open the possibility to comprehensively characterize microbial communities, including rare species. However, a still unresolved issue are the substantial error rates in the experimental process generating these sequences. To overcome these limitations we propose an approach, where each sample is split and the same amplification and sequencing protocol is applied to both halves. This procedure should allow to detect likely PCR and sequencing artifacts, and true rare species by comparison of the results of both parts. The AmpliconDuo package, whereas amplicon duo from here on refers to the two amplicon data sets of a split sample, is intended to help interpret the obtained read frequency distribution across split samples, and to filter the false positive reads. 2019-08-19
george public Fast and flexible Gaussian Process regression in Python 2019-08-19
r-aptreeshape public Simulation and analysis of phylogenetic tree topologies using statistical indices. It is a companion library of the 'ape' package. It provides additional functions for reading, plotting, manipulating phylogenetic trees. It also offers convenient web-access to public databases, and enables testing null models of macroevolution using corrected test statistics. Trees of class "phylo" (from 'ape' package) can be converted easily. Implements methods described in Bortolussi et al. (2005) <doi:10.1093/bioinformatics/bti798> and Maliet et al. (2017) <doi:10.1101/224295>. 2019-08-19
radical.utils public Shared code and tools for various RADICAL Projects (http://radical.rutgers.edu/) 2019-08-19
hdf5-static public HDF5 is a data model, library, and file format for storing and managing data 2019-08-19
onnx public Open Neural Network Exchange library 2019-08-19
mdsplus public MDSplus data management system 2019-08-19
r-ggstance public A 'ggplot2' extension that provides flipped components: horizontal versions of 'Stats' and 'Geoms', and vertical versions of 'Positions'. 2019-08-19
r-benchmarkme public Benchmark your CPU and compare against other CPUs. Also provides functions for obtaining system specifications, such as RAM, CPU type, and R version. 2019-08-19
nipype public Nipype, an open-source, community-developed initiative under the umbrella of NiPy, is a Python project that provides a uniform interface to existing neuroimaging software and facilitates interaction between these packages within a single workflow. Nipype provides an environment that encourages interactive exploration of algorithms from different packages (e.g., SPM, FSL, FreeSurfer, AFNI, Slicer, ANTS), eases the design of workflows within and between packages, and reduces the learning curve necessary to use different packages. Nipype is creating a collaborative platform for neuroimaging software development in a high-level language and addressing limitations of existing pipeline systems. 2019-08-19
molecule public Molecule aids in the development and testing of Ansible roles 2019-08-19
wntr public Water Network Tool for Resilience 2019-08-19
gsd public General simulation data 2019-08-19
fresnel public Path tracing for soft matter simulations. 2019-08-19
py2vega public A Python to Vega-expression transpiler. 2019-08-19
pyprojroot public Find project root paths and return relative project files 2019-08-19
ubermagtable public Reading and merging of OOMMF .odt and mumax3 .txt files 2019-08-19
fts-rest public File Transfer Service REST API 2019-08-19
micromagneticmodel public Python domain-specific language for defining micromagnetic models. 2019-08-19
ffmpeg public Cross-platform solution to record, convert and stream audio and video. 2019-08-19
mechanize public Stateful programmatic web browsing. 2019-08-19
openmc public OpenMC Monte Carlo Code 2019-08-19
ntlm-auth public Calculates NTLM Authentication codes 2019-08-19
pythran public a claimless python to c++ converter 2019-08-19
igl public Simple python geometry processing library 2019-08-19
cornac public A collection of recommendation algorithms and comparisons 2019-08-19
zeromq public A high-performance asynchronous messaging library. 2019-08-19
jupyterlab_code_formatter public A universal code formatter for JupyterLab. 2019-08-19
r-benchmarkmedata public Crowd sourced benchmarks from running the 'benchmarkme' package. 2019-08-19
testinfra public Test infrastructures 2019-08-19
ispyb public Python package to access ISPyB database 2019-08-19
clangdev public Development headers and libraries for Clang 2019-08-19
clang-tools public Development headers and libraries for Clang 2019-08-19
clangxx public Development headers and libraries for Clang 2019-08-19
libclang public Development headers and libraries for Clang 2019-08-19
clang public Development headers and libraries for Clang 2019-08-19
ticcltools public Tools for TICCL: Text Induced Corpus-Cleanup 2019-08-19
python-clang public Development headers and libraries for Clang 2019-08-19
adios-python public Python bindings for the Adaptable IO System (ADIOS) for flexible and fast scientific data processing. 2019-08-19
pybind11 public Seamless operability between C++11 and Python 2019-08-19
parse public parse() is the opposite of format() 2019-08-19
clang_bootstrap_osx-64 public clang compilers for conda-build 3 2019-08-19
clangxx_osx-64 public clang compilers for conda-build 3 2019-08-19
clang_osx-64 public clang compilers for conda-build 3 2019-08-19
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