Package Name | Access | Summary | Updated |
---|---|---|---|

r-freetypeharfbuzz | public | Unlike other tools that dynamically link to the 'Cairo' stack, 'freetypeharfbuzz' is statically linked to specific versions of the 'FreeType' and 'harfbuzz' libraries (2.9 and 1.7.6 respectively). This ensures deterministic computation of text box extents for situations where reproducible results are crucial (for instance unit tests of graphics). | 2019-07-19 |

r-fingerprint | public | Functions to manipulate binary fingerprints of arbitrary length. A fingerprint is represented by an object of S4 class 'fingerprint' which is internally represented a vector of integers, such that each element represents the position in the fingerprint that is set to 1. The bitwise logical functions in R are overridden so that they can be used directly with 'fingerprint' objects. A number of distance metrics are also available (many contributed by Michael Fadock). Fingerprints can be converted to Euclidean vectors (i.e., points on the unit hypersphere) and can also be folded using OR. Arbitrary fingerprint formats can be handled via line handlers. Currently handlers are provided for CDK, MOE and BCI fingerprint data. | 2019-07-19 |

r-kohonen | public | Functions to train self-organising maps (SOMs). Also interrogation of the maps and prediction using trained maps are supported. The name of the package refers to Teuvo Kohonen, the inventor of the SOM. | 2019-07-19 |

r-expsmooth | public | Data sets from the book "Forecasting with exponential smoothing: the state space approach" by Hyndman, Koehler, Ord and Snyder (Springer, 2008). | 2019-07-19 |

r-exposition | public | A variety of descriptive multivariate analyses with the singular value decomposition, such as principal components analysis, correspondence analysis, and multidimensional scaling. See An ExPosition of the Singular Value Decomposition in R (Beaton et al 2014) <doi:10.1016/j.csda.2013.11.006>. | 2019-07-19 |

r-geigen | public | Functions to compute generalized eigenvalues and eigenvectors, the generalized Schur decomposition and the generalized Singular Value Decomposition of a matrix pair, using Lapack routines. | 2019-07-19 |

proj4 | public | Cartographic Projections and Coordinate Transformations Library. | 2019-07-19 |

py-plumed | public | Python wrappers for plumed library | 2019-07-19 |

r-flextable | public | Create pretty tables for 'HTML', 'Microsoft Word' and 'Microsoft PowerPoint' documents. Functions are provided to let users create tables, modify and format their content. It extends package 'officer' that does not contain any feature for customized tabular reporting and can be used within R markdown documents. | 2019-07-19 |

r-fail | public | More comfortable interface to work with R data or source files in a key-value fashion. | 2019-07-19 |

r-fma | public | All data sets from "Forecasting: methods and applications" by Makridakis, Wheelwright & Hyndman (Wiley, 3rd ed., 1998). | 2019-07-19 |

r-fda | public | These functions were developed to support functional data analysis as described in Ramsay, J. O. and Silverman, B. W. (2005) Functional Data Analysis. New York: Springer. They were ported from earlier versions in Matlab and S-PLUS. An introduction appears in Ramsay, J. O., Hooker, Giles, and Graves, Spencer (2009) Functional Data Analysis with R and Matlab (Springer). The package includes data sets and script files working many examples including all but one of the 76 figures in this latter book. Matlab versions of the code and sample analyses are no longer distributed through CRAN, as they were when the book was published. For those, ftp from <http://www.psych.mcgill.ca/misc/fda/downloads/FDAfuns/> There you find a set of .zip files containing the functions and sample analyses, as well as two .txt files giving instructions for installation and some additional information. The changes from Version 2.4.1 are fixes of bugs in density.fd and removal of functions create.polynomial.basis, polynompen, and polynomial. These were deleted because the monomial basis does the same thing and because there were errors in the code. | 2019-07-19 |

r-functional | public | No Summary | 2019-07-19 |

r-findpython | public | Package designed to find an acceptable python binary. | 2019-07-19 |

r-locfdr | public | Computation of local false discovery rates. | 2019-07-19 |

r-genabel.data | public | GenABEL.data package consists of a data set used by GenABEL functions | 2019-07-19 |

r-genalg | public | R based genetic algorithm for binary and floating point chromosomes. | 2019-07-19 |

miniwdl | public | Developer toolkit for the Workflow Description Language (WDL) | 2019-07-19 |

plumed | public | Free energy calculations in molecular systems | 2019-07-19 |

mdsplus | public | MDSplus data management system | 2019-07-19 |

fontconfig | public | A library for configuring and customizing font access | 2019-07-19 |

libxslt | public | The XSLT C library developed for the GNOME project | 2019-07-19 |

slicedimage | public | Python module to access sliced imaging data | 2019-07-19 |

swepy | public | A python package for obtaining and manipulating Tb files from the MEaSUREs database | 2019-07-19 |

r-gglasso | public | A unified algorithm, blockwise-majorization-descent (BMD), for efficiently computing the solution paths of the group-lasso penalized least squares, logistic regression, Huberized SVM and squared SVM. The package is an implementation of Yang, Y. and Zou, H. (2015) DOI: <doi:10.1007/s11222-014-9498-5>. | 2019-07-19 |

r-geomap | public | Set of routines for making Map Projections (forward and inverse), Topographic Maps, Perspective plots, Geological Maps, geological map symbols, geological databases, interactive plotting and selection of focus regions. | 2019-07-19 |

r-gamlss | public | Functions for fitting the Generalized Additive Models for Location Scale and Shape introduced by Rigby and Stasinopoulos (2005), <doi:10.1111/j.1467-9876.2005.00510.x>. The models use a distributional regression approach where all the parameters of the conditional distribution of the response variable are modelled using explanatory variables. | 2019-07-19 |

r-gameofthrones | public | Implementation of the characteristic palettes from the TV show 'Game of Thrones'. | 2019-07-19 |

r-gamboostlss | public | Boosting models for fitting generalized additive models for location, shape and scale ('GAMLSS') to potentially high dimensional data. | 2019-07-19 |

vaex | public | Lazy Out-of-core dataframes and visualization for large (~billion rows/objects) tabular datasets | 2019-07-19 |

r-genius | public | Easily access song lyrics in a tidy way. | 2019-07-19 |

r-gamm4 | public | Estimate generalized additive mixed models via a version of function gamm() from 'mgcv', using 'lme4' for estimation. | 2019-07-19 |

geotiff | public | TIFF based interchange format for georeferenced raster imagery | 2019-07-19 |

r-ggeffects | public | Compute marginal effects from statistical models and returns the result as tidy data frames. These data frames are ready to use with the 'ggplot2'-package. Marginal effects can be calculated for many different models. Interaction terms, splines and polynomial terms are also supported. The main functions are ggpredict(), ggemmeans() and ggeffect(). There is a generic plot()-method to plot the results using 'ggplot2'. | 2019-07-19 |

r-geem | public | GEE estimation of the parameters in mean structures with possible correlation between the outcomes. User-specified mean link and variance functions are allowed, along with observation weighting. The 'M' in the name 'geeM' is meant to emphasize the use of the Matrix package, which allows for an implementation based fully in R. | 2019-07-19 |

r-genenet | public | Analyzes gene expression (time series) data with focus on the inference of gene networks. In particular, GeneNet implements the methods of Schaefer and Strimmer (2005a,b,c) and Opgen-Rhein and Strimmer (2006, 2007) for learning large-scale gene association networks (including assignment of putative directions). | 2019-07-19 |

r-ggfortify | public | Unified plotting tools for statistics commonly used, such as GLM, time series, PCA families, clustering and survival analysis. The package offers a single plotting interface for these analysis results and plots in a unified style using 'ggplot2'. | 2019-07-19 |

hs_restclient | public | HydroShare REST API client library | 2019-07-19 |

r-gmm | public | It is a complete suite to estimate models based on moment conditions. It includes the two step Generalized method of moments (Hansen 1982; <doi:10.2307/1912775>), the iterated GMM and continuous updated estimator (Hansen, Eaton and Yaron 1996; <doi:10.2307/1392442>) and several methods that belong to the Generalized Empirical Likelihood family of estimators (Smith 1997; <doi:10.1111/j.0013-0133.1997.174.x>, Kitamura 1997; <doi:10.1214/aos/1069362388>, Newey and Smith 2004; <doi:10.1111/j.1468-0262.2004.00482.x>, and Anatolyev 2005 <doi:10.1111/j.1468-0262.2005.00601.x>). | 2019-07-19 |

r-relimp | public | Functions to facilitate inference on the relative importance of predictors in a linear or generalized linear model, and a couple of useful Tcl/Tk widgets. | 2019-07-19 |

awscli | public | Universal Command Line Environment for AWS. | 2019-07-19 |

r-networkdynamic | public | Simple interface routines to facilitate the handling of network objects with complex intertemporal data. This is a part of the "statnet" suite of packages for network analysis. | 2019-07-19 |

boost-cpp | public | Free peer-reviewed portable C++ source libraries. | 2019-07-19 |

r-haplo.stats | public | Routines for the analysis of indirectly measured haplotypes. The statistical methods assume that all subjects are unrelated and that haplotypes are ambiguous (due to unknown linkage phase of the genetic markers). The main functions are | 2019-07-19 |

r-infotheo | public | This package implements various measures of information theory based on several entropy estimators. | 2019-07-19 |

r-ash | public | David Scott's ASH routines ported from S-PLUS to R. | 2019-07-19 |

signac-dashboard | public | signac-dashboard: data visualization for signac | 2019-07-19 |

r-gsubfn | public | The gsubfn function is like gsub but can take a replacement function or certain other objects instead of the replacement string. Matches and back references are input to the replacement function and replaced by the function output. gsubfn can be used to split strings based on content rather than delimiters and for quasi-perl-style string interpolation. The package also has facilities for translating formulas to functions and allowing such formulas in function calls instead of functions. This can be used with R functions such as apply, sapply, lapply, optim, integrate, xyplot, Filter and any other function that expects another function as an input argument or functions like cat or sql calls that may involve strings where substitution is desirable. There is also a facility for returning multiple objects from functions and a version of transform that allows the RHS to refer to LHS used in the same transform. | 2019-07-19 |

r-grr | public | Alternative implementations of some base R functions, including sort, order, and match. Functions are simplified but can be faster or have other advantages. | 2019-07-19 |

r-highlight | public | Syntax highlighter for R code based on the results of the R parser. Rendering in HTML and latex markup. Custom Sweave driver performing syntax highlighting of R code chunks. | 2019-07-19 |

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