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r-interactions
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A suite of functions for conducting and interpreting analysis of statistical interaction in regression models that was formerly part of the 'jtools' package. Functionality includes visualization of two- and three-way interactions among continuous and/or categorical variables as well as calculation of "simple slopes" and Johnson-Neyman intervals (see e.g., Bauer & Curran, 2005 <doi:10.1207/s15327906mbr4003_5>). These capabilities are implemented for generalized linear models in addition to the standard linear regression context.
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2025-09-24 |
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r-sjplot
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Collection of plotting and table output functions for data visualization. Results of various statistical analyses (that are commonly used in social sciences) can be visualized using this package, including simple and cross tabulated frequencies, histograms, box plots, (generalized) linear models, mixed effects models, principal component analysis and correlation matrices, cluster analyses, scatter plots, stacked scales, effects plots of regression models (including interaction terms) and much more. This package supports labelled data.
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2025-09-24 |
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torchvision
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Image and video datasets and models for torch deep learning
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2025-09-24 |
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torchvision-tests
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public |
Image and video datasets and models for torch deep learning
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2025-09-24 |
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r-feature
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Local inferential feature significance for multivariate kernel density estimation.
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2025-09-24 |
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r-varfrompdb
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Captures and compiles the genes and variants related to a disease, a phenotype or a clinical feature from the public databases including HPO (Human Phenotype Ontology, <http://human-phenotype-ontology.github.io/about.html>), Orphanet <http://www.orpha.net/consor/cgi-bin/index.php>, OMIM (Online Mendelian Inheritance in Man, <http://www.omim.org>), ClinVar <http://www.ncbi.nlm.nih.gov/clinvar>, and UniProt (Universal Protein Resource, <http://www.uniprot.org>) and PubMed abstracts. HPO provides a standardized vocabulary of phenotypic abnormalities encountered in human disease. HPO currently contains approximately 11,000 terms and over 115,000 annotations to hereditary diseases. Orphanet is the reference portal for information on rare diseases and orphan drugs, whose aim is to help improve the diagnosis, care and treatment of patients with rare diseases. OMIM is a continuously updated catalog of human genes and genetic disorders and traits, with particular focus on the molecular relationship between genetic variation and phenotypic expression. ClinVar is a freely accessible, public archive of reports of the relationships among human variations and phenotypes, with supporting evidence. UniProt focuses on amino acid altering variants imported from Ensembl Variation databases. For Homo sapiens, the variants including human polymorphisms and disease mutations in the UniProt are manually curated from UniProtKB/Swiss-Prot. Additionally, PubMed provides the primary and latest source of the information. Text mining was employed to capture the information from PubMed abstracts.
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2025-09-24 |
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r-lsd
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Create lots of colorful plots in a plethora of variations. Try the LSD demotour().
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2025-09-24 |
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r-textminer
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An aid for text mining in R, with a syntax that should be familiar to experienced R users. Provides a wrapper for several topic models that take similarly-formatted input and give similarly-formatted output. Has additional functionality for analyzing and diagnostics for topic models.
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2025-09-24 |
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syncthing
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Open Source Continuous File Synchronization
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2025-09-24 |
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flock
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flock(1) locks files
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2025-09-24 |
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r-igraph
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Routines for simple graphs and network analysis. It can handle large graphs very well and provides functions for generating random and regular graphs, graph visualization, centrality methods and much more.
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2025-09-24 |
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r-mgrs
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The 'Military Grid Reference System' ('MGRS') is the geocoordinate standard used by 'NATO' militaries for locating points on the earth. The 'MGRS' is derived from the 'Universal Transverse Mercator' ('UTM') grid system and the universal polar stereographic ('UPS') grid system, but uses a different labeling convention. The 'MGRS' is used for the entire earth. Methods are provided to convert 'MGRS' coordinates to and from other coordinate systems.
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2025-09-24 |
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openjph
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Open source implementation of High-throughput JPEG2000 (HTJ2K).
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2025-09-24 |
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pycobertura
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A Cobertura coverage parser that can diff reports and show coverage progress.
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2025-09-24 |
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rhumba
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These are the R bindings from Mamba to R, allowing users to install compiled packages in their environments.
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2025-09-24 |
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r-cometexacttest
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An algorithm for identifying combinations of mutually exclusive alterations in cancer genomes. CoMEt represents the mutations in a set M of k genes with a 2^k dimensional contingency table, and then computes the tail probability of observing T(M) exclusive alterations using an exact statistical test.
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2025-09-24 |
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r-vayr
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Position adjustments for 'ggplot2' to implement "visualize as you randomize" principles, which can be especially useful when plotting experimental data.
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2025-09-24 |
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r-ukbnmr
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A suite of utilities for working with the UK Biobank <https://www.ukbiobank.ac.uk/> Nuclear Magnetic Resonance spectroscopy (NMR) metabolomics data <https://biobank.ndph.ox.ac.uk/showcase/label.cgi?id=220>. Includes functions for extracting biomarkers from decoded UK Biobank field data, removing unwanted technical variation from biomarker concentrations, computing an extended set of lipid, fatty acid, and cholesterol fractions, and for re-deriving composite biomarkers and ratios after adjusting data for unwanted biological variation. For further details on methods see Ritchie SC et al. Sci Data (2023) <doi:10.1038/s41597-023-01949-y>.
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2025-09-24 |
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r-duckplyr
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A drop-in replacement for 'dplyr', powered by 'DuckDB' for performance. Also defines a set of generics that provide a low-level implementer's interface for the high-level user interface of 'dplyr'.
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2025-09-24 |
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r-blockmodeling
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This is primarily meant as an implementation of generalized blockmodeling for valued networks. In addition, measures of similarity or dissimilarity based on structural equivalence and regular equivalence (REGE algorithms) can be computed and partitioned matrices can be plotted: Žiberna (2007)<doi:10.1016/j.socnet.2006.04.002>, Žiberna (2008)<doi:10.1080/00222500701790207>, Žiberna (2014)<doi:10.1016/j.socnet.2014.04.002>.
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2025-09-24 |
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r-dbmodelr
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An ORM in R
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2025-09-24 |
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r-rlab
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Functions and Datasets Required for ST370 class
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2025-09-24 |
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r-strawr
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API for fast data extraction for .hic files that provides programmatic access to the matrices. It doesn't store the pointer data for all the matrices, only the one queried, and currently we are only supporting matrices (not vectors).
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2025-09-24 |
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r-qiimer
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Open QIIME output files in R, compute statistics, and create plots from the data.
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2025-09-24 |
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r-rcsf
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public |
Cloth Simulation Filter (CSF) is an airborne LiDAR (Light Detection and Ranging) ground points filtering algorithm which is based on cloth simulation. It tries to simulate the interactions between the cloth nodes and the corresponding LiDAR points, the locations of the cloth nodes can be determined to generate an approximation of the ground surface.
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2025-09-24 |
