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stglib
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public |
Process data from a variety of oceanographic instrumentation
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2025-09-24 |
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vercel-cli
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public |
Vercel's frontend cloud gives developers frameworks, workflows, and infrastructure to build a faster, more personalized web.
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2025-09-24 |
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r-coxme
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public |
This package fits Cox proportional hazards models containing both fixed and random effects. The random effects can have a general form, of which familial interactions (a "kinship" matrix) is a particular special case. Note that the simplest case of a mixed effects Cox model, i.e. a single random per-group intercept, is also called a "frailty" model. The approach is based on Rippatti and Palgren, Biometrics 2002.
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2025-09-24 |
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sourmash-minimal
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public |
Compute and compare MinHash signatures for DNA data sets.
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2025-09-24 |
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r-policytree
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public |
Learn optimal policies via doubly robust empirical welfare maximization over trees. This package implements the multi-action doubly robust approach of Zhou, Athey and Wager (2018) <arXiv:1810.04778> in the case where we want to learn policies that belong to the class of depth k decision trees.
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2025-09-24 |
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r-dnapath
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public |
Integrates pathway information into the differential network analysis of two gene expression datasets as described in Grimes, Potter, and Datta (2019) <doi:10.1038/s41598-019-41918-3>. Provides summary functions to break down the results at the pathway, gene, or individual connection level. The differential networks for each pathway of interest can be plotted, and the visualization will highlight any differentially expressed genes and all of the gene-gene associations that are significantly differentially connected.
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2025-09-24 |
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r-catnet
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public |
Structure learning and parameter estimation of discrete Bayesian networks using likelihood-based criteria. Exhaustive search for fixed node orders and stochastic search of optimal orders via simulated annealing algorithm are implemented.
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2025-09-24 |
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taxcalc
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public |
open-source microsimulation model for static analysis of USA federal income and payroll taxes.
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2025-09-24 |
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r-bibliometrix
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public |
Tool for quantitative research in scientometrics and bibliometrics. It provides various routines for importing bibliographic data from 'SCOPUS', 'Clarivate Analytics Web of Science' (<https://www.webofknowledge.com/>), 'Digital Science Dimensions' (<https://www.dimensions.ai/>), 'Cochrane Library' (<https://www.cochranelibrary.com/>), 'Lens' (<https://lens.org>), and 'PubMed' (<https://pubmed.ncbi.nlm.nih.gov/>) databases, performing bibliometric analysis and building networks for co-citation, coupling, scientific collaboration and co-word analysis.
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2025-09-24 |
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r-scrime
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public |
Tools for the analysis of high-dimensional data developed/implemented at the group "Statistical Complexity Reduction In Molecular Epidemiology" (SCRIME). Main focus is on SNP data. But most of the functions can also be applied to other types of categorical data.
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2025-09-24 |
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r-netrankr
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public |
Implements methods for centrality related analyses of networks. While the package includes the possibility to build more than 20 indices, its main focus lies on index-free assessment of centrality via partial rankings obtained by neighborhood-inclusion or positional dominance. These partial rankings can be analyzed with different methods, including probabilistic methods like computing expected node ranks and relative rank probabilities (how likely is it that a node is more central than another?). The methodology is described in depth in the vignettes and in Schoch (2018) <doi:10.1016/j.socnet.2017.12.003>.
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2025-09-24 |
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r-bnstruct
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public |
Bayesian Network Structure Learning from Data with Missing Values. The package implements the Silander-Myllymaki complete search, the Max-Min Parents-and-Children, the Hill-Climbing, the Max-Min Hill-climbing heuristic searches, and the Structural Expectation-Maximization algorithm. Available scoring functions are BDeu, AIC, BIC. The package also implements methods for generating and using bootstrap samples, imputed data, inference.
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2025-09-24 |
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r-cvxbiclustr
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public |
An iterative algorithm for solving a convex formulation of the biclustering problem.
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2025-09-24 |
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r-repmis
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public |
Tools to load 'R' packages and automatically generate BibTeX files citing them as well as load and cache plain-text and 'Excel' formatted data stored on 'GitHub', and from other sources.
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2025-09-24 |
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r-integr
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public |
Generates a 'Graphviz' graph of the most significant 3-way interaction gains (i.e. conditional information gains) based on a provided discrete data frame. Various output formats are supported ('Graphviz', SVG, PNG, PDF, PS). For references, see the webpage of Aleks Jakulin <http://stat.columbia.edu/~jakulin/Int/>.
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2025-09-24 |
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r-freqprof
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public |
Tools for generating an informative type of line graph, the frequency profile, which allows single behaviors, multiple behaviors, or the specific behavioral patterns of individual subjects to be graphed from occurrence/nonoccurrence behavioral data.
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2025-09-24 |
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r-slim
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public |
Fits singular linear models to longitudinal data. Singular linear models are useful when the number, or timing, of longitudinal observations may be informative about the observations themselves. They are described in Farewell (2010) <doi:10.1093/biomet/asp068>, and are extensions of the linear increments model <doi:10.1111/j.1467-9876.2007.00590.x> to general longitudinal data.
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2025-09-24 |
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r-redshifttools
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public |
Efficiently upload data into an Amazon Redshift database using the approach recommended by Amazon <https://aws.amazon.com/es/redshift/>.
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2025-09-24 |
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r-htm2txt
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public |
Convert a html document to simple plain texts by removing all html tags. This package utilizes regular expressions to strip off html tags. It also offers gettxt() and browse() function, which enables you to get or browse texts at a certain web page.
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2025-09-24 |
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flt
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public |
fast Legendre transform
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2025-09-24 |
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casacpp
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public |
C++ libraries underlying CASA, the radio astronomical data processing package
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2025-09-24 |
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pyladoc
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public |
Package for generating HTML and PDF/latex from python code
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2025-09-24 |
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r-distill
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public |
Scientific and technical article format for the web. 'Distill' articles feature attractive, reader-friendly typography, flexible layout options for visualizations, and full support for footnotes and citations.
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2025-09-24 |
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r-smvar
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public |
Implements the structural model for variances in order to detect differentially expressed genes from gene expression data
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2025-09-24 |
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r-stapler
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public |
An implementation of Simultaneous Truth and Performance Level Estimation (STAPLE) <doi:10.1109/TMI.2004.828354>. This method is used when there are multiple raters for an object, typically an image, and this method fuses these ratings into one rating. It uses an expectation-maximization method to estimate this rating and the individual specificity/sensitivity for each rater.
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2025-09-24 |
